Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.5e-259 899.0 459 100.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.6e-227 790.8 460 90.2
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.8e-226 788.5 458 90.8
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 6.8e-225 783.9 460 89.6
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 3.8e-223 778.1 463 88.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 6.4e-223 777.3 463 88.8
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 4.2e-222 774.6 458 88.6
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.2e-222 774.6 459 88.7
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 9.3e-222 773.5 455 88.8
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 3.0e-220 768.5 463 87.7
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.1e-218 762.3 458 87.1
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 9.3e-214 746.9 458 86.0
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.6e-213 746.1 458 86.0
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 4.0e-209 731.5 459 82.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 4.6e-205 718.0 457 82.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 3.7e-194 681.8 361 95.3
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 3.7e-194 681.8 361 95.3
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.1e-182 643.7 459 74.9
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 2.5e-182 642.5 401 82.3
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.2e-181 640.2 465 74.4
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 2.1e-181 639.4 457 75.5
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 6.1e-181 637.9 344 93.9
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 6.1e-181 637.9 361 89.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.8e-180 636.3 457 75.9
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 6.7e-180 634.4 367 86.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 8.8e-180 634.0 367 86.6
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.5e-179 633.3 459 74.5
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.0e-179 632.9 432 77.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.0e-179 632.9 362 88.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 2.6e-179 632.5 456 74.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.6e-179 632.5 377 84.4
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 9.7e-179 630.6 390 82.8
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.2e-178 629.4 461 73.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 6.3e-178 627.9 394 81.7
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.4e-177 626.7 363 87.6
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.4e-177 626.7 363 87.6
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.8e-177 626.3 363 86.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.4e-177 625.9 417 76.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.4e-177 625.9 393 80.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-177 625.5 454 73.8
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-177 625.5 454 73.8
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.1e-177 625.2 417 76.3
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.1e-177 624.0 363 87.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 9.1e-177 624.0 367 86.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 9.1e-177 624.0 361 86.7
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.2e-176 623.6 366 86.3
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.6e-176 622.5 363 85.7
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 4.5e-176 621.7 363 85.7
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.0e-175 620.5 362 86.2
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.3e-175 620.2 366 85.5
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.8e-175 618.6 392 81.6
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.0e-175 618.2 359 86.6
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 8.5e-175 617.5 449 73.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.1e-174 617.1 365 84.7
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.9e-174 616.3 403 77.9
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.9e-174 616.3 406 78.1
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 2.1e-173 612.8 365 85.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 7.9e-173 610.9 371 81.7
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.8e-172 609.8 363 84.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 3.9e-172 608.6 365 84.9
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.3e-171 605.5 403 76.4
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 5.7e-171 604.7 395 79.2
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 9.7e-171 604.0 361 81.4
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.7e-170 603.2 395 78.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.8e-170 602.4 368 83.4
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 3.7e-170 602.1 395 78.2
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 4.8e-170 601.7 391 78.0
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 8.2e-170 600.9 365 82.5
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.4e-169 600.1 470 69.6
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.4e-169 599.4 453 71.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.6e-168 595.9 420 74.5
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.8e-167 592.0 439 70.8
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 3.2e-166 589.0 346 86.1
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 7.2e-166 587.8 365 86.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 7.2e-166 587.8 345 85.2
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.7e-165 585.9 371 81.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.6e-165 585.5 344 84.3
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 4.7e-165 585.1 353 83.6
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 6.1e-165 584.7 351 83.5
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 3.0e-164 582.4 365 80.3
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 8.8e-164 580.9 402 75.6
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.2e-163 580.5 359 81.1
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 7.5e-163 577.8 464 68.1
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 4.8e-162 575.1 359 80.8
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 6.3e-162 574.7 352 81.8
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 6.3e-162 574.7 352 81.8
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.8e-161 573.2 339 84.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.1e-161 572.4 394 75.4
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 9.1e-161 570.9 378 77.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.7e-160 569.3 366 77.9
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 4.5e-160 568.5 339 84.1
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.0e-159 567.4 421 72.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.3e-159 567.0 366 80.3
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.1e-157 559.7 456 64.5
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.5e-155 553.5 365 78.1
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.5e-155 553.5 339 82.9
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.6e-152 543.5 412 71.1
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.2e-147 527.3 309 85.4
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.0e-147 526.6 362 72.9
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.0e-147 526.6 399 70.7
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.7e-146 523.5 301 85.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.4e-145 519.6 294 88.4
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.6e-144 516.9 328 80.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.0e-144 516.5 433 65.4
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.2e-141 507.3 340 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 2.1e-141 506.5 340 72.9
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.0e-140 504.2 312 79.2
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.0e-140 504.2 339 72.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.3e-140 503.1 355 71.3
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 9.5e-134 481.1 279 85.3
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.1e-133 479.9 340 69.4
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.6e-133 479.2 317 77.3
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-129 467.6 336 70.5
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.7e-128 463.0 399 64.7
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.2e-123 447.6 301 79.1
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 6.0e-120 435.3 310 72.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.5e-118 429.9 260 81.9
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.6e-115 419.9 251 81.7
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 7.1e-97 358.6 208 85.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.3e-93 347.8 288 67.4
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 7.1e-89 332.0 199 82.9
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 2.7e-88 330.1 186 91.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 3.7e-77 293.1 359 52.4
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 4.5e-75 286.2 335 45.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 5.9e-75 285.8 348 45.4
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-62 245.0 132 89.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.7e-62 241.9 144 85.4
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 1.9e-57 227.6 335 36.7
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.8e-55 221.1 123 88.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 3.5e-51 206.8 375 38.1
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.0e-42 176.4 130 73.8
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-40 171.8 104 79.8
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.4e-38 163.7 109 77.1
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.4e-36 157.5 123 65.9
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-29 135.2 80 86.2
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-29 135.2 80 86.2
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.3e-29 135.2 80 86.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.1e-28 132.1 101 64.4
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 5.4e-28 129.8 82 79.3
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-27 128.3 80 81.2
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.6e-27 128.3 80 81.2
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 5.9e-27 126.3 80 80.0
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.9e-25 121.3 79 74.7
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-25 120.9 79 79.7
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 3.3e-25 120.6 105 64.8
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 9.5e-25 119.0 64 89.1
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 9.8e-22 109.0 191 35.1
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 5.4e-20 103.2 64 82.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 3.0e-18 97.4 88 62.5
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 6.8e-15 86.3 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.1e-12 79.0 43 90.7
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 4.1e-12 77.0 75 58.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.5e-09 67.8 36 88.9
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.7e-08 63.5 37 78.4
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 8.1e-08 62.8 63 52.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 4.0e-07 60.5 35 80.0
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 4.0e-07 60.5 37 73.0


User provided reference genes

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