Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.4e-126 455.7 253 100.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 3.9e-113 411.8 253 87.7
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.5e-112 409.8 253 88.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 9.6e-112 407.1 253 87.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.3e-111 406.8 253 87.4
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.6e-109 397.5 244 88.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.1e-107 391.0 246 87.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-106 390.2 246 88.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 6.0e-106 387.9 244 88.1
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 4.3e-104 381.7 236 88.6
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 8.2e-103 377.5 237 87.8
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.1e-102 377.1 237 88.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.5e-101 373.2 246 85.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.5e-101 373.2 251 81.3
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.0e-101 372.9 243 85.6
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.2e-99 365.2 260 79.6
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.5e-99 364.8 246 83.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-98 363.6 244 84.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 3.4e-93 345.5 252 77.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.3e-92 343.6 245 78.8
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.7e-92 343.2 252 76.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.7e-92 343.2 252 76.6
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.8e-92 342.0 245 78.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.1e-90 336.3 246 72.8
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.6e-90 335.5 251 73.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.6e-90 335.5 246 76.0
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.6e-90 335.5 252 71.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.6e-90 335.1 255 72.9
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.3e-89 333.6 252 74.6
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.9e-89 332.0 251 74.5
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.1e-89 331.6 244 75.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.7e-89 331.3 251 70.9
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.7e-89 331.3 253 72.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 6.7e-89 331.3 251 72.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.5e-88 330.1 253 72.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.5e-88 329.3 253 73.5
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.7e-88 327.4 256 73.0
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.3e-87 327.0 248 75.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.2e-87 326.2 251 70.5
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.2e-87 326.2 251 69.7
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 6.3e-87 324.7 255 68.2
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.4e-86 323.6 249 69.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.4e-86 323.6 252 71.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.4e-86 322.8 252 70.2
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.4e-86 322.8 251 72.1
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 5.3e-86 321.6 251 68.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.3e-86 321.6 250 68.8
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.3e-86 321.6 250 72.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 6.9e-86 321.2 251 68.9
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 9.1e-86 320.9 243 69.5
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.2e-85 320.5 242 73.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.5e-85 320.1 252 72.2
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 2.0e-85 319.7 251 72.1
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.4e-85 318.9 246 72.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.4e-85 318.9 252 69.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.3e-84 317.0 253 71.1
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.2e-84 316.2 247 73.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.9e-84 315.8 249 68.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.9e-84 315.8 251 66.5
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 3.8e-84 315.5 252 70.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.9e-83 313.2 250 68.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 247 72.5
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.2e-83 312.0 240 74.6
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 7.2e-83 311.2 203 76.4
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 9.4e-83 310.8 246 72.0
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.6e-82 310.1 252 69.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.1e-82 309.7 243 72.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.1e-82 309.7 256 71.9
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.1e-82 309.7 252 70.2
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.1e-82 309.7 243 71.6
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.7e-82 309.3 263 65.4
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 7.9e-82 307.8 253 68.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.0e-81 307.4 246 71.1
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 3.0e-81 305.8 249 70.7
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 8.8e-81 304.3 252 70.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 8.8e-81 304.3 253 70.0
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 8.8e-81 304.3 253 70.0
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.1e-80 303.9 255 70.6
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.5e-80 303.5 251 68.1
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.5e-80 303.5 247 66.8
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-80 303.1 255 70.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.6e-80 302.8 246 69.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.4e-80 302.0 252 68.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 4.4e-80 302.0 251 64.1
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.4e-80 301.2 254 65.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 9.7e-80 300.8 245 69.4
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.2e-79 299.7 249 69.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-78 297.4 256 64.5
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.8e-78 296.6 208 69.7
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.4e-78 296.2 246 69.1
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 9.1e-78 294.3 248 66.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.5e-77 293.5 244 65.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.5e-77 293.5 194 74.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.6e-77 292.7 245 68.2
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.9e-77 291.6 269 63.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.3e-76 290.4 343 52.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 2.2e-76 289.7 246 66.3
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.9e-76 289.3 245 66.5
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.2e-75 285.4 247 60.7
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.7e-74 282.0 251 67.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.1e-74 281.6 251 67.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.8e-73 280.0 226 63.3
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.3e-73 279.6 297 60.3
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 7.4e-72 274.6 248 62.9
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 8.2e-71 271.2 252 63.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 7.0e-70 268.1 248 64.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.7e-69 264.6 333 53.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.3e-68 263.8 252 59.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 5.0e-68 261.9 273 58.2
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.2e-67 259.2 287 54.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 3.3e-64 249.2 242 61.6
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.4e-64 248.8 254 55.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.5e-64 248.1 246 58.1
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.1e-62 244.2 246 60.2
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.3e-60 237.3 246 57.3
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 7.2e-59 231.5 246 56.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.2e-58 230.7 172 75.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.5e-56 223.8 168 66.1
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.0e-56 223.4 247 57.1
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 5.7e-56 221.9 248 55.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.0e-54 214.9 240 55.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.3e-52 210.7 237 49.4
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.7e-52 210.3 215 53.5
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.2e-51 204.9 148 69.6
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-50 203.8 242 52.1
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 4.0e-49 199.1 136 72.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.6e-45 187.2 123 78.0
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.8e-45 184.9 199 63.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.8e-42 176.4 136 66.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.7e-42 175.6 110 94.5
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.3e-39 167.5 256 43.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.7e-39 166.0 136 67.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.3e-35 152.5 145 65.5
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-31 140.6 341 40.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 8.3e-31 138.3 225 36.0
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 6.6e-28 128.6 233 35.2
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.5e-27 127.5 114 72.8
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 9.5e-27 124.8 231 35.1
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-25 120.9 61 96.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-24 117.1 92 64.1
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 7.5e-24 115.2 72 77.8
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.9e-19 100.5 79 63.3
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-18 97.8 79 62.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.1e-09 66.6 78 59.0
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.4e-08 62.8 184 32.1
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.9e-07 60.1 38 73.7
Cfa024493 Carpinus fangiana HOM05D003486 ORTHO05D124746 5.4e-06 55.8 121 27.3
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 5.4e-06 55.8 67 44.8
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.4e-06 55.8 34 67.6
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 9.3e-06 55.1 135 29.6


User provided reference genes

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