Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.4e-59 231.9 111 100.0
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.7e-41 172.6 109 80.7
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 5.8e-37 157.5 110 76.4
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 5.8e-37 157.5 110 76.4
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 5.8e-37 157.5 110 76.4
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 9.9e-37 156.8 110 75.5
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 9.9e-37 156.8 110 75.5
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 2.9e-36 155.2 109 75.2
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 4.6e-34 147.9 114 66.7
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 3.9e-33 144.8 101 73.3
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 1.5e-32 142.9 107 68.2
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 2.5e-32 142.1 107 67.3
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 5.6e-32 141.0 108 66.7
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.8e-31 138.7 107 66.4
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.8e-31 138.7 107 66.4
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.8e-31 138.7 107 66.4
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 4.8e-31 137.9 107 63.6
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 6.2e-31 137.5 111 62.2
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 6.2e-31 137.5 111 62.2
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.1e-30 136.7 107 65.4
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.1e-30 136.7 107 65.4
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.1e-30 136.7 107 64.5
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 3.1e-30 135.2 108 63.9
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.6e-29 132.1 107 61.7
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 3.2e-27 125.2 111 61.3
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-26 122.5 111 59.5
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-26 122.5 111 59.5
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 1.3e-25 119.8 111 58.6
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 3.8e-20 101.7 111 52.3
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.1e-19 100.1 80 65.0
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 1.1e-19 100.1 98 54.1
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.5e-19 99.0 74 64.9
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.1e-18 95.9 76 63.2
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 4.6e-18 94.7 105 50.5
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 4.6e-18 94.7 76 59.2
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 1.0e-17 93.6 74 63.5
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 1.3e-17 93.2 75 61.3
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.3e-17 93.2 78 60.3
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 2.3e-17 92.4 69 63.8
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 2.3e-17 92.4 72 61.1
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 2.3e-17 92.4 92 53.3
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.3e-17 92.4 97 55.7
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 2.3e-17 92.4 75 60.0
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.0e-17 92.0 98 53.1
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 3.9e-17 91.7 77 61.0
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 3.9e-17 91.7 97 54.6
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.9e-17 91.7 76 60.5
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 8.7e-17 90.5 109 48.6
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 2.5e-16 89.0 102 52.0
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 3.3e-16 88.6 67 65.7
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 4.3e-16 88.2 74 64.9
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 4.3e-16 88.2 74 64.9
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.7e-16 87.8 80 55.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 5.7e-16 87.8 80 55.0
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 7.4e-16 87.4 74 60.8
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.4e-16 87.4 80 57.5
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 9.7e-16 87.0 79 59.5
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 1.3e-15 86.7 104 46.2
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 1.3e-15 86.7 93 52.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 8.2e-15 84.0 77 57.1
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 1.1e-14 83.6 102 49.0
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.1e-14 83.6 102 49.0
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.4e-14 83.2 102 49.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.4e-14 83.2 102 49.0
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.4e-14 82.4 102 48.0
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.5e-13 79.7 82 54.9
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 3.4e-13 78.6 70 60.0
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 9.4e-11 70.5 77 54.5
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.1e-10 69.3 84 51.2
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 2.1e-10 69.3 62 62.9
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 2.7e-10 68.9 117 41.0
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 2.7e-10 68.9 77 51.9
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 6.1e-10 67.8 91 46.2
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 6.1e-10 67.8 50 60.0
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 6.7e-09 64.3 57 61.4
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 1.1e-08 63.5 78 51.3
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 3.3e-08 62.0 113 37.2
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 5.7e-08 61.2 100 41.0
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 9.7e-08 60.5 49 57.1
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 2.2e-07 59.3 94 41.5
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.8e-07 58.9 48 56.2
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 3.7e-07 58.5 66 51.5
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 6.3e-07 57.8 48 56.2
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 8.2e-07 57.4 48 54.2
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 8.2e-07 57.4 49 55.1
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.1e-06 57.0 113 35.4
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 1.1e-06 57.0 42 64.3
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 2.4e-06 55.8 85 45.9
PGR031G0494 Punica granatum HOM05D007708 ORTHO05D009506 4.1e-06 55.1 66 50.0
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 5.3e-06 54.7 55 58.2


User provided reference genes

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