Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 1.3e-67 260.0 129 100.0
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 3.2e-55 218.8 132 81.8
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.0e-53 213.8 131 81.7
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 1.3e-53 213.4 132 81.8
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.9e-52 209.5 132 79.5
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 1.9e-52 209.5 131 80.9
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 2.5e-52 209.1 131 80.2
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 5.6e-52 208.0 131 80.9
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 5.6e-52 208.0 131 80.9
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 5.6e-52 208.0 131 80.9
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 7.4e-52 207.6 131 79.4
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.8e-51 205.7 133 78.9
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 5.3e-50 201.4 132 75.0
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 6.5e-48 194.5 130 76.2
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 5.5e-47 191.4 132 73.5
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.7e-46 189.1 132 74.2
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 6.7e-45 184.5 129 72.1
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 3.3e-44 182.2 131 68.7
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 5.1e-37 158.3 118 67.8
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 3.3e-28 129.0 131 55.0
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.5e-25 120.2 129 50.4
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 2.6e-25 119.4 122 52.5
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 2.6e-25 119.4 117 56.4
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 4.2e-23 112.1 120 52.5
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.6e-22 110.2 123 49.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.8e-21 106.7 123 47.2
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 2.3e-21 106.3 119 49.6
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 5.2e-21 105.1 121 48.8
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 6.7e-21 104.8 120 47.5
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 2.0e-20 103.2 88 59.1
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 2.6e-20 102.8 119 47.9
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.3e-20 102.4 120 50.8
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 3.3e-20 102.4 124 50.8
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 7.4e-20 101.3 117 49.6
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 7.4e-20 101.3 119 48.7
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 9.7e-20 100.9 90 57.8
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.3e-19 100.5 119 48.7
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 1.7e-19 100.1 117 45.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.2e-19 99.8 113 47.8
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 3.7e-19 99.0 123 48.8
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 8.2e-19 97.8 122 48.4
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 1.4e-18 97.1 117 47.9
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.1e-18 95.9 120 44.2
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 3.1e-18 95.9 117 47.9
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 4.1e-18 95.5 119 43.7
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 5.3e-18 95.1 122 45.1
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 5.3e-18 95.1 120 47.5
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 9.1e-18 94.4 123 43.9
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 9.1e-18 94.4 125 44.0
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 9.1e-18 94.4 122 45.9
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 1.6e-17 93.6 115 44.3
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.6e-17 93.6 121 46.3
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.6e-17 93.6 121 45.5
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.0e-17 93.2 123 43.9
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 2.0e-17 93.2 119 43.7
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.0e-17 93.2 125 38.4
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 2.0e-17 93.2 72 59.7
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.6e-17 92.8 121 45.5
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.6e-17 92.8 121 45.5
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.6e-17 92.8 121 45.5
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 3.5e-17 92.4 123 45.5
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.5e-17 92.4 121 45.5
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 4.5e-17 92.0 121 45.5
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 5.9e-17 91.7 123 42.3
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 5.9e-17 91.7 121 47.1
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.0e-16 90.9 127 45.7
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.0e-16 90.9 120 40.8
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 1.7e-16 90.1 125 42.4
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 2.2e-16 89.7 84 52.4
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.2e-16 89.7 119 45.4
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.2e-16 89.7 124 43.5
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.2e-16 89.7 86 52.3
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.9e-16 89.4 124 44.4
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.9e-16 89.4 124 43.5
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.9e-16 89.4 119 46.2
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 3.8e-16 89.0 81 48.1
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 5.0e-16 88.6 131 42.7
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 6.5e-16 88.2 126 44.4
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.1e-15 87.4 95 50.5
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 1.9e-15 86.7 123 43.9
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 2.5e-15 86.3 119 40.3
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 7.2e-15 84.7 110 46.4
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 1.6e-14 83.6 114 44.7
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 2.1e-14 83.2 115 45.2
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 6.1e-14 81.6 123 38.2
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 8.0e-14 81.3 122 41.0
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.8e-13 80.1 120 45.8
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.8e-13 80.1 126 40.5
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.3e-13 79.7 120 45.8
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.0e-13 79.3 105 44.8
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 3.0e-13 79.3 121 40.5
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 3.0e-13 79.3 58 56.9
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 8.8e-13 77.8 58 55.2
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 2.0e-12 76.6 68 52.9
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.6e-12 76.3 56 60.7
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 2.6e-12 76.3 78 53.8
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.1e-10 70.9 41 68.3
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 1.8e-10 70.1 118 38.1
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 2.4e-10 69.7 114 37.7
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 7.0e-10 68.2 117 39.3
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 7.7e-09 64.7 63 44.4
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 5.5e-07 58.5 46 60.9
ClCG03G004360 Citrullus lanatus HOM05D002014 ORTHO05D001958 1.2e-06 57.4 122 30.3


User provided reference genes

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