Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 4.1e-176 621.3 322 100.0
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 6.0e-151 537.7 303 90.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.0e-150 535.4 303 89.8
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 5.6e-149 531.2 303 89.1
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 9.6e-149 530.4 303 89.4
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.6e-148 529.6 303 89.4
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.9e-141 506.1 304 83.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-141 505.8 305 83.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 7.3e-141 504.2 305 83.6
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.8e-140 502.3 304 82.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.0e-138 496.1 305 85.2
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.2e-135 486.9 307 79.5
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-131 473.8 305 78.0
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-129 466.1 315 79.0
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 9.3e-128 460.7 352 72.4
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 9.3e-128 460.7 352 72.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.1e-123 445.7 307 79.8
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 2.5e-120 436.0 305 74.8
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 8.7e-118 427.6 304 72.7
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 8.7e-118 427.6 307 70.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.1e-117 427.2 307 74.9
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.2e-116 422.9 311 73.0
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.8e-116 422.5 346 69.1
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.8e-116 422.5 346 69.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 4.1e-115 418.7 307 69.1
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 3.4e-114 415.6 316 70.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.9e-114 414.8 308 69.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.0e-113 414.1 302 68.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 2.2e-113 412.9 307 74.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 6.5e-113 411.4 307 73.9
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.9e-112 409.8 308 73.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.2e-112 408.7 307 70.4
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.2e-112 408.7 308 69.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.2e-112 407.9 308 72.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-111 407.1 307 72.3
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.1e-111 406.4 308 72.7
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.1e-111 406.4 308 74.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.7e-111 406.0 316 69.3
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.7e-111 406.0 307 68.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-110 404.1 307 72.3
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.4e-110 403.7 309 72.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.0e-110 402.5 307 67.8
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 6.7e-110 401.4 308 72.1
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-109 400.6 307 67.4
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.8e-108 396.0 308 73.1
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.7e-108 395.6 309 72.8
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.4e-107 393.7 307 71.0
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.4e-107 392.9 323 70.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.1e-107 391.0 310 72.3
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.2e-106 390.6 307 71.0
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.4e-106 389.0 312 72.4
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.7e-105 386.7 307 70.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-105 386.3 292 69.2
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.2e-105 386.3 345 61.7
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 8.5e-105 384.4 310 67.4
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.1e-104 384.0 307 69.1
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 2.5e-104 382.9 308 71.4
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.5e-104 382.9 308 69.5
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 3.2e-104 382.5 309 70.6
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 7.2e-104 381.3 308 68.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.6e-103 380.2 308 67.9
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.1e-103 379.8 315 70.2
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.7e-103 379.4 307 70.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 7.9e-103 377.9 307 69.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.4e-102 377.1 307 69.1
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 3.0e-102 375.9 308 64.0
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.1e-102 375.2 310 69.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.1e-102 375.2 313 68.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.0e-101 373.2 313 68.1
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.0e-101 373.2 308 69.2
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 4.4e-101 372.1 308 68.5
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.2e-100 369.8 303 68.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 6.3e-100 368.2 308 67.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 3.1e-99 365.9 308 66.9
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.0e-98 363.2 317 66.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.5e-98 362.5 303 63.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.5e-98 362.5 315 68.9
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.9e-97 359.4 310 67.7
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 3.8e-97 359.0 284 71.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 3.8e-97 359.0 312 66.0
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 8.5e-97 357.8 308 65.9
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 5.5e-96 355.1 310 65.2
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 8.0e-95 351.3 321 63.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 8.0e-95 351.3 307 60.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.0e-93 346.7 309 65.4
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 7.5e-93 344.7 339 55.8
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.4e-91 340.5 324 63.0
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-91 339.3 341 59.8
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.3e-91 338.6 309 64.4
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 2.1e-87 326.6 260 65.8
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.0e-87 324.7 320 60.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.4e-86 323.9 283 67.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.0e-86 322.8 238 72.7
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 4.0e-86 322.4 308 63.0
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.0e-85 320.1 266 68.4
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.0e-85 320.1 320 60.3
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 7.5e-85 318.2 324 59.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-84 317.4 230 73.9
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-84 317.4 230 73.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.8e-84 316.2 290 65.9
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 1.8e-83 313.5 274 63.5
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.8e-83 313.5 307 62.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 3.1e-83 312.8 275 65.1
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 5.4e-83 312.0 234 69.2
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-82 309.7 266 65.4
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.5e-82 309.3 307 62.2
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.5e-82 308.9 265 67.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.8e-81 305.8 285 64.6
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 6.5e-81 305.1 218 75.2
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.1e-80 304.3 219 75.3
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.9e-80 303.5 315 61.6
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.8e-75 287.0 286 61.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.2e-74 284.3 259 67.2
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.5e-74 282.3 259 66.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 4.5e-74 282.3 245 69.0
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.5e-72 277.3 252 62.3
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 4.7e-71 272.3 147 91.8
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.3e-70 270.0 292 55.8
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 5.2e-70 268.9 235 64.3
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.7e-68 262.7 215 69.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.4e-67 258.8 240 62.1
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.5e-66 256.1 189 75.1
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.7e-60 237.3 234 63.7
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.4e-59 234.2 234 63.2
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 6.0e-58 228.8 235 62.1
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 6.6e-57 225.3 248 57.7
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.6e-55 220.7 242 59.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.9e-52 209.9 233 57.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.1e-51 208.0 234 59.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.0e-50 202.2 236 58.1
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.7e-49 200.7 297 44.1
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-49 200.7 173 61.3
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.9e-49 199.5 244 52.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.6e-45 185.3 143 73.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 9.9e-45 184.9 165 61.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.3e-44 184.5 323 40.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.9e-43 180.6 321 36.1
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-42 177.2 150 70.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.0e-41 174.9 266 45.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.0e-41 173.3 246 52.8
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 5.1e-41 172.6 247 44.5
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.4e-37 159.8 290 39.0
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.4e-35 152.5 74 91.9
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.5e-32 144.4 157 59.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-29 134.4 170 52.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 3.4e-29 133.3 73 76.7
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.8e-28 129.8 76 75.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.5e-24 117.1 167 42.5
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 8.1e-23 112.1 74 66.2
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 2.2e-20 104.0 133 48.1
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 4.2e-19 99.8 179 29.6
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.8e-17 94.4 50 76.0
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 8.7e-17 92.0 92 56.5
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-10 70.9 49 71.4
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 4.6e-10 69.7 47 72.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 8.7e-09 65.5 72 59.7
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.3e-08 63.2 99 43.4
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.3e-07 61.6 100 38.0


User provided reference genes

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