Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.8e-212 742.3 361 100.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.8e-188 662.5 359 83.3
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.0e-188 661.4 359 83.6
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 4.0e-188 661.4 359 83.8
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 4.0e-188 661.4 359 82.5
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 7.6e-187 657.1 359 82.2
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.3e-186 656.4 359 82.5
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.3e-186 656.4 359 82.2
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.3e-186 656.4 359 83.6
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.8e-186 654.8 359 81.9
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.8e-186 654.8 359 81.9
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 8.4e-186 653.7 359 82.2
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.6e-184 649.4 359 81.1
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.3e-158 561.6 364 69.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.4e-158 560.8 364 69.5
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 9.7e-158 560.5 364 69.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.3e-154 550.1 360 68.6
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.7e-154 549.7 363 69.4
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 3.8e-154 548.5 360 67.8
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.8e-154 548.5 343 71.1
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.1e-153 547.0 364 67.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.7e-152 542.3 366 66.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.7e-152 542.3 357 68.3
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.1e-152 541.2 363 68.0
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.9e-152 540.8 358 67.9
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.8e-151 539.7 363 68.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 6.7e-151 537.7 365 68.2
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 6.7e-151 537.7 361 68.7
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.5e-150 536.6 363 68.0
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 2.6e-150 535.8 362 67.4
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.3e-150 535.4 365 67.7
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 3.3e-150 535.4 364 67.3
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.4e-150 535.0 368 66.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.7e-150 534.6 342 68.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 7.4e-150 534.3 362 67.7
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.7e-150 533.9 358 66.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.7e-149 533.1 362 66.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.7e-149 533.1 360 66.7
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.2e-149 532.7 363 65.3
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.8e-149 532.3 363 67.2
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.8e-149 531.6 361 65.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 4.8e-149 531.6 365 67.7
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 4.8e-149 531.6 345 68.7
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 6.3e-149 531.2 357 66.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.2e-149 530.8 364 66.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.1e-148 530.4 363 66.4
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.4e-148 529.3 363 66.7
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 5.3e-148 528.1 350 68.9
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.5e-147 525.4 362 66.0
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 7.7e-147 524.2 361 64.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.3e-146 523.5 351 67.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.7e-146 523.1 359 65.2
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.9e-146 522.3 360 63.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-146 521.9 361 65.7
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 6.5e-146 521.2 342 67.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.8e-143 513.1 364 64.0
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.0e-143 512.3 364 64.0
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 3.0e-143 512.3 362 65.5
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.6e-142 509.2 350 65.1
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.3e-142 508.8 368 64.1
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 7.5e-142 507.7 302 73.8
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.7e-141 505.4 353 65.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.1e-140 503.8 363 62.0
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-140 503.8 336 67.9
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-140 503.1 328 68.9
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 4.1e-140 501.9 327 68.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 5.3e-140 501.5 357 62.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 5.3e-140 501.5 267 83.9
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 9.1e-140 500.7 327 68.8
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 2.0e-139 499.6 362 63.5
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 4.5e-139 498.4 363 61.2
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.5e-139 498.4 308 69.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.3e-138 496.9 361 59.8
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.9e-138 495.7 356 61.0
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.9e-137 493.0 358 59.5
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.2e-137 492.3 362 61.3
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 9.4e-137 490.7 362 62.2
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.6e-136 490.0 362 61.0
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.0e-135 487.3 359 62.1
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.4e-135 486.9 362 60.5
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-134 483.4 363 59.5
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 7.5e-134 481.1 346 62.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 6.3e-133 478.0 359 61.8
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.8e-132 476.5 360 61.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.4e-132 476.1 357 60.2
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.4e-132 476.1 347 61.1
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.1e-132 475.7 348 61.2
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 7.0e-132 474.6 360 60.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.6e-131 473.4 359 59.3
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.7e-131 472.6 452 51.1
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 3.5e-131 472.2 360 60.3
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 5.9e-131 471.5 351 62.7
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.0e-130 470.7 356 60.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.7e-130 469.9 367 61.9
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.7e-130 469.9 367 61.9
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 8.5e-130 467.6 346 61.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.9e-129 466.5 364 61.0
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.2e-129 465.3 356 59.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 7.2e-129 464.5 359 59.3
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.2e-128 463.8 335 62.7
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.1e-128 461.5 357 58.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 5.2e-127 458.4 448 49.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 3.4e-126 455.7 362 56.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.7e-126 454.9 391 54.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 2.2e-125 453.0 357 60.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.8e-124 449.9 355 57.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.5e-123 445.3 365 55.9
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 5.9e-123 444.9 358 56.7
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 5.6e-121 438.3 284 69.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-120 437.2 284 69.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-119 434.1 284 68.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 8.6e-114 414.5 261 71.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.5e-113 412.9 315 60.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.3e-113 412.5 362 53.9
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.3e-106 390.6 357 51.0
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.6e-104 382.5 286 59.4
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.2e-103 378.6 224 74.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 4.9e-101 372.1 289 57.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-100 370.9 255 66.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 6.2e-96 355.1 317 54.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.4e-94 349.4 363 47.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.6e-90 335.1 203 71.4
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 6.9e-87 325.1 216 67.1
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.9e-87 325.1 231 61.9
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 5.8e-86 322.0 230 61.3
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.9e-85 318.9 281 53.0
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.2e-84 316.2 358 45.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.9e-82 309.3 362 42.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.0e-78 297.0 184 73.4
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.9e-78 294.7 300 49.0
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-76 291.2 202 65.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.6e-75 287.3 362 40.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 2.7e-75 286.6 309 46.3
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.3e-74 284.3 194 67.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.9e-74 282.7 209 64.1
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.3e-58 231.1 240 48.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-56 224.6 160 64.4
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.3e-55 219.2 155 62.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.5e-38 162.9 281 34.2
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-33 148.3 217 36.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.6e-30 137.1 108 57.4
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.2e-28 129.8 109 56.9
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.1e-23 115.2 100 57.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.9e-21 107.1 102 48.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.4e-15 88.2 99 41.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-12 78.6 188 27.7
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.1e-07 62.0 114 32.5


User provided reference genes

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