Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 2.5e-99 365.5 199 100.0
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 1.4e-73 280.0 215 75.3
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 3.8e-71 271.9 216 73.6
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 3.2e-70 268.9 215 73.0
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 9.3e-70 267.3 215 72.6
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 2.1e-69 266.2 200 76.5
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 6.1e-69 264.6 197 78.2
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 6.1e-69 264.6 197 78.2
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 2.5e-67 259.2 215 71.6
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 1.5e-64 250.0 197 74.6
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 2.1e-61 239.6 203 70.0
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 6.7e-60 234.6 183 73.2
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.1e-59 233.8 205 68.8
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.1e-59 233.8 205 68.8
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 8.2e-58 227.6 217 62.2
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 8.2e-58 227.6 207 67.1
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 8.2e-58 227.6 207 67.1
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 5.3e-57 224.9 203 66.5
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 2.2e-55 219.5 212 61.3
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 5.0e-55 218.4 212 60.8
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.4e-54 216.9 207 62.3
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 7.2e-54 214.5 207 60.9
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 3.6e-53 212.2 207 60.9
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 7.9e-53 211.1 200 62.5
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 1.8e-52 209.9 215 59.5
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 1.8e-52 209.9 215 60.9
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 2.3e-52 209.5 212 60.4
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 2.3e-52 209.5 215 61.9
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 5.2e-52 208.4 204 60.3
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 6.7e-52 208.0 215 59.5
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.1e-51 207.2 219 56.6
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 1.5e-51 206.8 211 62.1
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 2.0e-51 206.5 213 60.6
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 2.0e-51 206.5 205 61.5
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 3.3e-51 205.7 215 58.1
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 3.3e-51 205.7 215 59.1
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 4.4e-51 205.3 209 61.7
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 5.7e-51 204.9 216 57.4
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 5.7e-51 204.9 211 60.7
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 7.4e-51 204.5 216 58.3
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 1.7e-50 203.4 215 60.5
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 1.7e-50 203.4 212 61.8
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 3.7e-50 202.2 212 60.8
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 3.7e-50 202.2 215 60.0
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 3.7e-50 202.2 214 59.8
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 4.8e-50 201.8 212 58.5
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 4.8e-50 201.8 216 56.5
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 1.1e-49 200.7 206 58.3
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 1.4e-49 200.3 130 85.4
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 2.4e-49 199.5 214 58.9
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 3.1e-49 199.1 203 60.1
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 9.1e-49 197.6 214 58.4
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.2e-48 197.2 205 59.0
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 1.6e-48 196.8 212 58.5
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 5.9e-48 194.9 214 57.5
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.7e-47 193.4 217 57.1
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 1.7e-47 193.4 217 57.1
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.9e-47 192.6 217 57.1
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.9e-47 192.6 230 54.8
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 2.9e-47 192.6 207 58.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.8e-47 192.2 217 57.1
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 5.0e-47 191.8 209 56.5
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 5.0e-47 191.8 218 54.1
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 8.5e-47 191.0 214 55.1
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.9e-46 189.9 232 53.4
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 1.9e-46 189.9 229 53.3
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 3.2e-46 189.1 207 59.4
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 3.2e-46 189.1 201 57.2
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 4.2e-46 188.7 216 56.5
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 5.5e-46 188.3 232 53.0
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 7.2e-46 188.0 206 56.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 9.4e-46 187.6 201 56.7
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 1.6e-45 186.8 232 52.6
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 6.1e-45 184.9 205 57.6
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 6.1e-45 184.9 215 55.8
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 1.0e-44 184.1 197 55.8
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 1.8e-44 183.3 214 54.7
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 5.2e-44 181.8 130 76.2
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.7e-44 181.4 202 56.4
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 8.8e-44 181.0 168 61.9
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.5e-43 180.3 227 52.4
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 2.6e-43 179.5 208 54.3
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 5.7e-43 178.3 238 51.7
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 1.3e-42 177.2 216 53.7
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.3e-42 177.2 208 54.3
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 3.7e-42 175.6 194 52.6
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 3.7e-42 175.6 211 53.6
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.4e-41 172.9 227 51.1
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 3.1e-41 172.6 211 53.1
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 4.1e-41 172.2 220 51.4
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 2.0e-40 169.9 198 54.5
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.2e-39 166.4 119 72.3
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 2.9e-39 166.0 208 49.5
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.5e-38 163.7 91 93.4
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 4.2e-38 162.2 204 52.9
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 9.4e-38 161.0 191 53.4
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 5.2e-36 155.2 88 89.8
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 5.2e-36 155.2 231 48.9
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.2e-35 154.1 107 72.0
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 2.0e-35 153.3 112 73.2
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-33 146.7 162 53.1
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-27 127.5 211 41.2
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 1.3e-26 124.0 82 79.3
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 2.3e-23 113.2 209 41.6
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 3.3e-22 109.4 212 42.9
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 7.3e-22 108.2 191 42.4
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 9.5e-22 107.8 148 47.3
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 9.5e-22 107.8 148 48.0
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.6e-21 107.1 206 38.8
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 3.7e-18 95.9 134 44.8
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-17 94.4 211 38.9
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 1.9e-14 83.6 45 91.1
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 2.6e-11 73.2 151 38.4
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 2.6e-11 73.2 215 34.4
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.6e-11 73.2 44 77.3
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.8e-11 72.0 53 67.9
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 3.2e-09 66.2 146 37.0
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-08 64.3 151 33.1
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 8.6e-07 58.2 38 65.8


User provided reference genes

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