Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 1.7e-112 409.5 216 100.0
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 6.2e-59 231.5 241 61.0
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 6.0e-54 214.9 238 58.8
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 9.5e-52 207.6 240 58.3
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 3.6e-51 205.7 236 57.6
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 1.8e-50 203.4 227 56.8
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 4.0e-50 202.2 242 57.4
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 1.1e-47 194.1 228 55.3
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 7.1e-47 191.4 231 55.0
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 9.2e-47 191.0 231 53.2
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 1.6e-46 190.3 231 53.2
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 3.5e-46 189.1 229 54.6
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 6.0e-46 188.3 235 53.2
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 1.7e-45 186.8 227 52.4
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 2.3e-45 186.4 224 54.0
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 6.6e-45 184.9 233 52.4
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 6.6e-45 184.9 233 52.4
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 6.6e-45 184.9 233 52.4
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 8.1e-43 177.9 230 51.7
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 1.1e-42 177.6 219 52.1
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 1.1e-42 177.6 250 49.2
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 1.4e-42 177.2 219 52.1
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 1.8e-42 176.8 234 50.9
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 2.4e-42 176.4 220 51.4
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 2.4e-42 176.4 220 51.4
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 2.4e-42 176.4 220 51.4
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 5.2e-42 175.3 234 53.8
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 1.5e-41 173.7 235 51.1
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 3.8e-40 169.1 206 55.3
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 4.9e-40 168.7 225 52.4
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 9.3e-39 164.5 224 49.6
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 2.1e-35 153.3 251 46.6
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 2.4e-34 149.8 262 43.9
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.5e-33 147.1 243 46.9
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.5e-33 147.1 243 46.9
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.0e-33 146.7 243 46.5
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 5.8e-33 145.2 247 47.8
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 1.3e-32 144.1 256 43.0
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 6.4e-32 141.7 275 43.3
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 1.1e-31 141.0 256 43.8
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 2.4e-31 139.8 258 45.3
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 3.2e-31 139.4 256 43.8
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 4.2e-31 139.0 260 46.2
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 4.2e-31 139.0 257 43.2
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 5.4e-31 138.7 244 44.7
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 5.4e-31 138.7 245 42.9
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 1.6e-30 137.1 272 44.1
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 6.0e-30 135.2 218 46.8
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 7.9e-30 134.8 265 39.2
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 2.3e-29 133.3 281 40.6
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 3.0e-29 132.9 261 40.6
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 3.0e-29 132.9 238 42.4
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 6.7e-29 131.7 221 44.3
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 6.7e-29 131.7 116 63.8
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 8.7e-29 131.3 221 44.8
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.1e-28 131.0 259 43.2
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 1.9e-28 130.2 259 40.9
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 2.5e-28 129.8 294 38.4
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 3.3e-28 129.4 258 41.5
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 5.6e-28 128.6 237 42.2
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 5.6e-28 128.6 276 39.9
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 7.4e-28 128.3 255 43.1
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 1.3e-27 127.5 271 37.6
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.1e-27 126.7 261 40.6
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.8e-27 126.3 255 43.5
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 3.6e-27 125.9 256 40.2
TWI14G0993 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 4.8e-27 125.6 261 41.4
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 8.1e-27 124.8 254 39.4
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.4e-26 124.0 238 42.9
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 1.8e-26 123.6 249 41.4
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 1.8e-26 123.6 233 42.1
MD00G1137300 Malus domestica HOM05D004916 ORTHO05D006147 1.8e-26 123.6 110 61.8
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 1.8e-26 123.6 271 39.5
Sp6g01560 Schrenkiella parvula HOM05D004916 ORTHO05D006147 1.8e-26 123.6 245 40.4
Gohir.A07G132300 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.0e-26 122.5 252 41.3
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 4.0e-26 122.5 265 39.2
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 9.0e-26 121.3 225 42.2
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 9.0e-26 121.3 264 39.4
TAR362G0057 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.2e-25 120.9 189 49.2
TAR362G0875 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.2e-25 120.9 189 49.2
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.5e-25 120.6 291 38.1
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 2.0e-25 120.2 265 39.2
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 2.6e-25 119.8 269 39.0
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 2.6e-25 119.8 256 39.5
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 4.5e-25 119.0 259 41.3
Gohir.D07G136500 Gossypium hirsutum HOM05D004916 ORTHO05D006147 4.5e-25 119.0 262 38.5
Aqoxy5G02859 Aquilegia oxysepala HOM05D004916 ORTHO05D006147 7.6e-25 118.2 241 40.7
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 7.6e-25 118.2 268 39.6
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 9.9e-25 117.9 112 58.9
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 9.9e-25 117.9 112 58.9
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-24 117.5 113 58.4
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 2.2e-24 116.7 253 39.5
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 2.9e-24 116.3 198 43.9
CSS0009622 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 2.9e-24 116.3 101 63.4
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 2.9e-24 116.3 111 57.7
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 2.9e-24 116.3 111 57.7
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 3.8e-24 115.9 198 43.4
THA.LOC104825924 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 4.9e-24 115.5 246 39.8
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 8.4e-24 114.8 233 42.1
CANSAT25G0633 Cannabis sativa HOM05D004916 ORTHO05D006147 1.9e-23 113.6 281 36.7
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.4e-23 113.2 243 38.3
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 4.2e-23 112.5 112 56.2
CSS0004254 Camellia sinensis var. sinensis HOM05D004916 ORTHO05D006147 5.5e-23 112.1 101 61.4
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 5.5e-23 112.1 253 38.3
Thhalv10028918m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 4.6e-22 109.0 245 40.4
MBI18_g03855_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 6.0e-22 108.6 233 41.6
Phvul.007G208300 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 3.0e-21 106.3 234 41.9
C03p38500 Brassica napus HOM05D004916 ORTHO05D006147 5.1e-21 105.5 246 37.4
A03p31520 Brassica napus HOM05D004916 ORTHO05D006147 6.7e-21 105.1 244 37.7
BraA03t12331Z Brassica rapa HOM05D004916 ORTHO05D006147 6.7e-21 105.1 244 37.7
BcaC04g24078 Brassica carinata HOM05D004916 ORTHO05D006147 2.5e-20 103.2 231 39.4
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 3.3e-20 102.8 264 37.5
C04p00870 Brassica napus HOM05D004916 ORTHO05D006147 4.3e-20 102.4 177 42.9
BcaB01g02376 Brassica carinata HOM05D004916 ORTHO05D006147 9.6e-20 101.3 229 40.6
C09p01290 Brassica napus HOM05D004916 ORTHO05D006147 9.6e-20 101.3 231 39.0
PSO170G5346 Papaver somniferum HOM05D004916 ORTHO05D006147 1.3e-19 100.9 164 42.7
PSO357G0289 Papaver somniferum HOM05D004916 ORTHO05D006147 1.3e-19 100.9 164 42.7
BolC4t21725H Brassica oleracea HOM05D004916 ORTHO05D006147 2.4e-18 96.7 171 42.7
BcaC01g06807 Brassica carinata HOM05D004916 ORTHO05D006147 5.3e-18 95.5 241 36.5
BolC3t16124H Brassica oleracea HOM05D004916 ORTHO05D006147 5.3e-18 95.5 241 36.5
BolC9t53063H Brassica oleracea HOM05D004916 ORTHO05D006147 6.9e-18 95.1 231 38.1
A09p01200 Brassica napus HOM05D004916 ORTHO05D006147 1.5e-17 94.0 228 39.0
BNapus_Darmor_BZH_scaffold_296p00020 Brassica napus HOM05D004916 ORTHO05D006147 1.5e-17 94.0 173 42.2
C04p39620 Brassica napus HOM05D004916 ORTHO05D006147 1.5e-17 94.0 173 42.2
BraA09t35790Z Brassica rapa HOM05D004916 ORTHO05D006147 1.5e-17 94.0 228 39.0
AT4G01670 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 2.0e-17 93.6 232 37.5
Aa31LG5G1380 Aethionema arabicum HOM05D004916 ORTHO05D006147 2.6e-17 93.2 237 36.3
Gohir.A08G121950 Gossypium hirsutum HOM05D004916 ORTHO05D006147 5.8e-17 92.0 217 39.2
Carub.0006s3554 Capsella rubella HOM05D004916 ORTHO05D006147 7.6e-17 91.7 222 38.7
BolC4t25528H Brassica oleracea HOM05D004916 ORTHO05D006147 4.9e-16 89.0 167 41.9
CARHR250000 Cardamine hirsuta HOM05D004916 ORTHO05D006147 8.4e-16 88.2 223 39.5
CDE11G0113 Ceratophyllum demersum HOM05D004916 ORTHO05D006147 1.1e-15 87.8 126 47.6
AL6G51680 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 1.9e-15 87.0 247 35.2
MBI18_g28911_MAGBIO Magnolia biondii HOM05D004916 ORTHO05D006147 2.5e-15 86.7 212 39.6
Gorai.004G147700 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.3e-15 84.7 234 37.6
Os01g0284900 Oryza sativa ssp. japonica HOM05D004916 ORTHO05D006147 6.0e-14 82.0 145 44.1
Glyma.02G006700 Glycine max HOM05D004916 ORTHO05D006147 3.3e-12 76.3 124 47.6
Actinidia25874 Actinidia chinensis HOM05D004916 ORTHO05D006147 4.3e-12 75.9 104 47.1
ATR0796G037 Amborella trichopoda HOM05D004916 ORTHO05D006147 4.3e-12 75.9 82 57.3
Zm00001eb129480 Zea mays HOM05D004916 ORTHO05D006147 2.4e-10 70.1 245 34.3
THA.LOC109116831 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 3.8e-08 62.8 143 39.9
Atru.chr3.1556 Acer truncatum HOM05D000925 ORTHO05D001623 1.1e-07 61.2 76 47.4
TAR362G1173 Trochodendron aralioides HOM05D000925 ORTHO05D001623 7.2e-07 58.5 45 64.4
Actinidia34616 Actinidia chinensis HOM05D000925 ORTHO05D001623 9.3e-07 58.2 37 70.3
Actinidia35966 Actinidia chinensis HOM05D000925 ORTHO05D001623 9.3e-07 58.2 38 68.4
Ah.07g201770 Amaranthus hybridus HOM05D000925 ORTHO05D001623 9.3e-07 58.2 52 59.6
Os01g0898800 Oryza sativa ssp. japonica HOM05D000925 ORTHO05D001623 9.3e-07 58.2 83 44.6
TAR633G0580 Trochodendron aralioides HOM05D000925 ORTHO05D001623 9.3e-07 58.2 147 34.7
CDE02G0100 Ceratophyllum demersum HOM05D000925 ORTHO05D001623 1.2e-06 57.8 117 36.8
Peaxi162Scf00375g00616 Petunia axillaris HOM05D000925 ORTHO05D001623 1.2e-06 57.8 41 63.4
HPP92_012762 Vanilla planifolia HOM05D004916 ORTHO05D006147 1.2e-06 57.8 163 30.7
Duzib093G1454 Durio zibethinus HOM05D000925 ORTHO05D001623 1.6e-06 57.4 45 62.2
arahy.Tifrunner.gnm1.ann1.AINH12 Arachis hypogaea HOM05D000925 ORTHO05D001623 2.1e-06 57.0 83 45.8
arahy.Tifrunner.gnm1.ann1.SD34JU Arachis hypogaea HOM05D000925 ORTHO05D001623 2.1e-06 57.0 83 45.8
HanXRQChr07g0186101 Helianthus annuus HOM05D000925 ORTHO05D001623 2.1e-06 57.0 30 83.3
Lj5g0008666 Lotus japonicus HOM05D000925 ORTHO05D001623 2.1e-06 57.0 80 46.2
Nitab4.5_0002368g0040 Nicotiana tabacum HOM05D000925 ORTHO05D001623 2.1e-06 57.0 38 65.8
Nitab4.5_0004579g0030 Nicotiana tabacum HOM05D000925 ORTHO05D001623 2.1e-06 57.0 38 65.8
CAN.G65.186 Capsicum annuum HOM05D000925 ORTHO05D001623 2.7e-06 56.6 38 65.8
Cfa015766 Carpinus fangiana HOM05D008684 ORTHO05D010796 2.7e-06 56.6 38 71.1
Ca_11406_v3 Cicer arietinum L. HOM05D000925 ORTHO05D001623 2.7e-06 56.6 70 44.3
ClCG07G015530 Citrullus lanatus HOM05D000925 ORTHO05D001623 2.7e-06 56.6 42 64.3
ECA233G2175 Erigeron canadensis HOM05D000925 ORTHO05D001623 2.7e-06 56.6 38 68.4
Solyc06g073450.4 Solanum lycopersicum HOM05D000925 ORTHO05D001623 2.7e-06 56.6 38 65.8
PGSC0003DMG400027006 Solanum tuberosum HOM05D000925 ORTHO05D001623 2.7e-06 56.6 38 65.8
EL10Ac3g05577 Beta vulgaris HOM05D000925 ORTHO05D001623 3.6e-06 56.2 42 66.7
CSS0026799 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 3.6e-06 56.2 42 66.7
HanXRQChr02g0058001 Helianthus annuus HOM05D000925 ORTHO05D001623 3.6e-06 56.2 134 32.8
Atru.chr3.1577 Acer truncatum HOM05D000925 ORTHO05D001623 4.6e-06 55.8 131 35.1
FvH4_4g11250 Fragaria vesca HOM05D000925 ORTHO05D001623 4.6e-06 55.8 76 47.4
FAN07G0453 Fragaria x ananassa HOM05D000925 ORTHO05D001623 4.6e-06 55.8 76 47.4
Zm00001eb417630 Zea mays HOM05D004916 ORTHO05D037121 4.6e-06 55.8 88 48.9
CiPaw.02G056000 Carya illinoinensis HOM05D000925 ORTHO05D001623 6.1e-06 55.5 30 83.3
MELO3C017731.2 Cucumis melo HOM05D000925 ORTHO05D001623 6.1e-06 55.5 45 60.0
CsaV3_4G003160 Cucumis sativus L. HOM05D000925 ORTHO05D001623 6.1e-06 55.5 45 60.0
Oeu006545.1 Olea europaea HOM05D004916 ORTHO05D006147 6.1e-06 55.5 75 48.0
Sp4g14030 Schrenkiella parvula HOM05D000925 ORTHO05D001623 6.1e-06 55.5 30 83.3
THA.LOC104803633 Tarenaya hassleriana HOM05D000925 ORTHO05D001623 6.1e-06 55.5 64 43.8
CSS0038754 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 7.9e-06 55.1 44 59.1
Lsat_1_v5_gn_6_55301 Lactuca sativa HOM05D000925 ORTHO05D001623 7.9e-06 55.1 42 61.9
SEGI_26069 Sequoiadendron giganteum HOM05D000925 ORTHO05D001623 7.9e-06 55.1 37 67.6
Zm00001eb354450 Zea mays HOM05D004916 ORTHO05D037121 7.9e-06 55.1 84 45.2


User provided reference genes

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