Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G15980 Aethionema arabicum HOM05D000573 ORTHO05D000425 1.7e-79 299.3 150 100.0
BolC8t51272H Brassica oleracea HOM05D000573 ORTHO05D000425 4.6e-37 158.3 103 74.8
BraA09t40820Z Brassica rapa HOM05D000573 ORTHO05D000425 4.6e-37 158.3 103 73.8
A09p54070 Brassica napus HOM05D000573 ORTHO05D000425 6.0e-37 157.9 103 73.8
CARHR172350 Cardamine hirsuta HOM05D000573 ORTHO05D000425 1.3e-36 156.8 103 74.8
Thhalv10006151m.g Eutrema salsugineum HOM05D000573 ORTHO05D000425 1.3e-36 156.8 103 77.7
BcaC07g40696 Brassica carinata HOM05D000573 ORTHO05D000425 5.1e-36 154.8 103 73.8
BcaC07g42625 Brassica carinata HOM05D000573 ORTHO05D000425 5.1e-36 154.8 103 73.8
C08p36960 Brassica napus HOM05D000573 ORTHO05D000425 5.1e-36 154.8 103 73.8
AT3G62000 Arabidopsis thaliana HOM05D000573 ORTHO05D000425 1.5e-35 153.3 103 72.8
Carub.0005s2875 Capsella rubella HOM05D000573 ORTHO05D000425 3.3e-35 152.1 103 74.8
AL5G44620 Arabidopsis lyrata HOM05D000573 ORTHO05D000425 9.6e-35 150.6 103 73.8
THA.LOC104802110 Tarenaya hassleriana HOM05D000573 ORTHO05D000425 1.3e-28 130.2 103 67.0
Sp5g01360 Schrenkiella parvula HOM05D000573 ORTHO05D000425 4.3e-27 125.2 84 73.8
Thecc.01G329200 Theobroma cacao HOM05D000573 ORTHO05D000425 3.4e-24 115.5 110 54.5
Duzib138G0303 Durio zibethinus HOM05D000573 ORTHO05D000425 1.6e-21 106.7 110 53.6
Atru.chr5.815 Acer truncatum HOM05D000573 ORTHO05D000425 6.0e-21 104.8 107 54.2
CANSAT56G0351 Cannabis sativa HOM05D000573 ORTHO05D000425 1.8e-20 103.2 111 52.3
Sabra02G0132000 Salix brachista HOM05D000573 ORTHO05D000425 6.7e-20 101.3 114 52.6
Gohir.A12G118500 Gossypium hirsutum HOM05D000573 ORTHO05D000425 1.1e-19 100.5 112 51.8
Gohir.D12G122300 Gossypium hirsutum HOM05D000573 ORTHO05D000425 3.3e-19 99.0 112 50.9
Gorai.008G133100 Gossypium raimondii HOM05D000573 ORTHO05D000425 5.7e-19 98.2 112 50.0
Cpa.g.sc57.61 Carica papaya HOM05D000573 ORTHO05D000425 9.7e-19 97.4 84 64.3
Manes.01G237200 Manihot esculenta HOM05D000573 ORTHO05D000425 1.3e-18 97.1 118 52.5
QL04p071295 Quercus lobata HOM05D000573 ORTHO05D000425 1.3e-18 97.1 77 63.6
MD05G1209400 Malus domestica HOM05D000573 ORTHO05D000425 2.2e-18 96.3 69 63.8
Prupe.4G148100 Prunus persica HOM05D000573 ORTHO05D000425 2.8e-18 95.9 69 63.8
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 4.8e-18 95.1 68 70.6
arahy.Tifrunner.gnm1.ann1.06014X Arachis hypogaea HOM05D000573 ORTHO05D000425 6.3e-18 94.7 67 67.2
Potri.002G183600 Populus trichocarpa HOM05D000573 ORTHO05D000425 6.3e-18 94.7 116 48.3
CiPaw.12G045400 Carya illinoinensis HOM05D000573 ORTHO05D000425 8.2e-18 94.4 73 65.8
Eucgr.F04260 Eucalyptus grandis HOM05D000573 ORTHO05D000425 8.2e-18 94.4 108 49.1
TPR.G29763 Trifolium pratense HOM05D000573 ORTHO05D000425 8.2e-18 94.4 65 70.8
Lj3g0011456 Lotus japonicus HOM05D000573 ORTHO05D000425 1.8e-17 93.2 67 67.2
GSVIVG01027486001 Vitis vinifera HOM05D000573 ORTHO05D000425 1.8e-17 93.2 85 57.6
EL10Ac5g11793 Beta vulgaris HOM05D000573 ORTHO05D000425 2.4e-17 92.8 65 69.2
Cfa019448 Carpinus fangiana HOM05D000573 ORTHO05D000425 3.1e-17 92.4 62 74.2
Medtr2g070410 Medicago truncatula HOM05D000573 ORTHO05D000425 3.1e-17 92.4 71 64.8
arahy.Tifrunner.gnm1.ann1.AU4AKR Arachis hypogaea HOM05D000573 ORTHO05D000425 4.1e-17 92.0 67 65.7
VMungo1080G1329 Vigna mungo HOM05D000573 ORTHO05D000425 4.1e-17 92.0 67 65.7
Rhsim10G0083100 Rhododendron simsii HOM05D000573 ORTHO05D000425 6.9e-17 91.3 70 64.3
RcHm_v2.0_Chr5g0027561 Rosa chinensis HOM05D000573 ORTHO05D000425 6.9e-17 91.3 57 71.9
FvH4_3g16510 Fragaria vesca HOM05D000573 ORTHO05D000425 2.0e-16 89.7 57 70.2
FAN25G0530 Fragaria x ananassa HOM05D000573 ORTHO05D000425 2.0e-16 89.7 57 70.2
Glyma.08G175700 Glycine max HOM05D000573 ORTHO05D000425 2.0e-16 89.7 67 64.2
AUR62036299 Chenopodium quinoa HOM05D000573 ORTHO05D000425 2.6e-16 89.4 53 77.4
AL5G44610 Arabidopsis lyrata HOM05D000573 ORTHO05D000425 3.4e-16 89.0 88 61.4
Dinv32663 Davidia involucrata HOM05D000573 ORTHO05D000425 3.4e-16 89.0 63 69.8
AT3G61990 Arabidopsis thaliana HOM05D000573 ORTHO05D000425 7.6e-16 87.8 88 61.4
Migut.A00398 Erythranthe guttata HOM05D000573 ORTHO05D000425 7.6e-16 87.8 81 56.8
Psat1g001520 Pisum sativum HOM05D000573 ORTHO05D000425 1.0e-15 87.4 68 64.7
Ca_03460_v3 Cicer arietinum L. HOM05D000573 ORTHO05D000425 1.3e-15 87.0 67 64.2
FAN21G2458 Fragaria x ananassa HOM05D000573 ORTHO05D000425 1.3e-15 87.0 67 64.2
Sc01g0005230 Simmondsia chinensis HOM05D000573 ORTHO05D000425 1.3e-15 87.0 61 65.6
Phvul.005G051900 Phaseolus vulgaris HOM05D000573 ORTHO05D000425 1.7e-15 86.7 53 75.5
Ciclev10021579m.g Citrus clementina HOM05D000573 ORTHO05D000425 2.2e-15 86.3 110 47.3
PGR042G2428 Punica granatum HOM05D000573 ORTHO05D000425 2.2e-15 86.3 63 66.7
TAR375G0302 Trochodendron aralioides HOM05D000573 ORTHO05D000425 2.2e-15 86.3 51 78.4
FAN16G3481 Fragaria x ananassa HOM05D000573 ORTHO05D000425 3.8e-15 85.5 57 68.4
MBI04_g09826_MAGBIO Magnolia biondii HOM05D000573 ORTHO05D000425 3.8e-15 85.5 54 74.1
vmacro05472 Vaccinium macrocarpon HOM05D000573 ORTHO05D000425 5.0e-15 85.1 68 61.8
Lj9A610G58 Lonicera japonica HOM05D000573 ORTHO05D000425 6.5e-15 84.7 49 81.6
Lalb_Chr25g0285321 Lupinus albus HOM05D000573 ORTHO05D000425 6.5e-15 84.7 51 74.5
Ah.02g112180 Amaranthus hybridus HOM05D000573 ORTHO05D000425 1.4e-14 83.6 79 50.6
Oeu048537.1 Olea europaea HOM05D000573 ORTHO05D000425 1.9e-14 83.2 60 66.7
Nn1g00498 Nelumbo nucifera HOM05D000573 ORTHO05D000425 2.5e-14 82.8 51 74.5
SalBow4G0535 Salvia bowleyana HOM05D000573 ORTHO05D000425 4.2e-14 82.0 107 47.7
SGA_v2.0_scaffold27G11637 Striga asiatica HOM05D000573 ORTHO05D000425 4.2e-14 82.0 58 65.5
HPP92_005365 Vanilla planifolia HOM05D000573 ORTHO05D000425 4.2e-14 82.0 104 44.2
unitig_699.g19813 Utricularia gibba HOM05D000573 ORTHO05D000425 5.5e-14 81.6 83 55.4
Lsat_1_v5_gn_2_108380 Lactuca sativa HOM05D000573 ORTHO05D000425 7.2e-14 81.3 79 53.2
ATR0579G089 Amborella trichopoda HOM05D000573 ORTHO05D000425 9.3e-14 80.9 48 77.1
HanXRQChr03g0060601 Helianthus annuus HOM05D000573 ORTHO05D000425 1.6e-13 80.1 48 77.1
HanXRQChr07g0194631 Helianthus annuus HOM05D000573 ORTHO05D000425 1.6e-13 80.1 48 77.1
DCAR_020094 Daucus carota HOM05D000573 ORTHO05D000425 2.1e-13 79.7 51 72.5
DCAR_020095 Daucus carota HOM05D000573 ORTHO05D000425 2.1e-13 79.7 51 72.5
HPP92_005317 Vanilla planifolia HOM05D000573 ORTHO05D000425 2.7e-13 79.3 65 56.9
HPP92_005323 Vanilla planifolia HOM05D000573 ORTHO05D000425 2.7e-13 79.3 65 56.9
ECA238G3901 Erigeron canadensis HOM05D000573 ORTHO05D000425 3.6e-13 79.0 51 70.6
PGSC0003DMG401026272 Solanum tuberosum HOM05D000573 ORTHO05D000425 3.6e-13 79.0 91 48.4
PSO782G0926 Papaver somniferum HOM05D000573 ORTHO05D000425 4.6e-13 78.6 51 68.6
Peaxi162Scf00045g02123 Petunia axillaris HOM05D000573 ORTHO05D000425 4.6e-13 78.6 81 50.6
Sopen08g002780 Solanum pennellii HOM05D000573 ORTHO05D000425 6.1e-13 78.2 77 51.9
CAN.G353.19 Capsicum annuum HOM05D000573 ORTHO05D000425 7.9e-13 77.8 77 53.2
FAN11G3936 Fragaria x ananassa HOM05D000573 ORTHO05D000425 1.0e-12 77.4 45 75.6
CSS0037002 Camellia sinensis var. sinensis HOM05D000573 ORTHO05D000425 1.4e-12 77.0 59 64.4
Cc02_g30340 Coffea canephora HOM05D000573 ORTHO05D000425 1.8e-12 76.6 51 68.6
Nitab4.5_0012293g0010 Nicotiana tabacum HOM05D000573 ORTHO05D000425 2.3e-12 76.3 56 62.5
PSO063G4502 Papaver somniferum HOM05D000573 ORTHO05D000425 3.0e-12 75.9 51 66.7
Solyc08g006830.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 6.7e-12 74.7 77 50.6
Nitab4.5_0000114g0130 Nicotiana tabacum HOM05D000573 ORTHO05D000425 4.3e-11 72.0 51 64.7
MELO3C016162.2 Cucumis melo HOM05D000573 ORTHO05D000425 2.2e-10 69.7 46 69.6
AagrBONN_evm.TU.Sc2ySwM_340.1452 Anthoceros agrestis HOM05D000573 ORTHO05D000425 3.7e-10 68.9 83 47.0
CDE12G0122 Ceratophyllum demersum HOM05D000573 ORTHO05D000425 3.7e-10 68.9 47 70.2
ClCG07G010560 Citrullus lanatus HOM05D000573 ORTHO05D000425 6.3e-10 68.2 46 67.4
CsaV3_4G007750 Cucumis sativus L. HOM05D000573 ORTHO05D000425 6.3e-10 68.2 46 69.6
Sed0025257 Sechium edule HOM05D000573 ORTHO05D000425 6.3e-10 68.2 48 68.8
HanXRQChr09g0259151 Helianthus annuus HOM05D000573 ORTHO05D000425 8.2e-10 67.8 45 71.1
Aqoxy5G04388 Aquilegia oxysepala HOM05D000573 ORTHO05D000425 1.4e-09 67.0 41 75.6
Haze_08500 Corylus avellana HOM05D000573 ORTHO05D000425 2.6e-08 62.8 43 67.4
Zm00001eb416160 Zea mays HOM05D000573 ORTHO05D000425 6.5e-07 58.2 77 44.2
Cre13.g571950 Chlamydomonas reinhardtii HOM05D000573 ORTHO05D000425 4.2e-06 55.5 39 59.0
Os08g0154000 Oryza sativa ssp. japonica HOM05D000573 ORTHO05D000425 5.5e-06 55.1 50 52.0


User provided reference genes

Program Settings