Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 0.0e+00 1320.4 645 100.0
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 0.0e+00 1166.0 649 88.0
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 0.0e+00 1165.6 651 87.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 0.0e+00 1154.0 649 87.4
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 0.0e+00 1077.4 662 81.4
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 0.0e+00 1075.5 652 82.1
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 8.5e-306 1053.1 654 80.7
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 8.8e-303 1043.1 655 78.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 8.8e-303 1043.1 655 78.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 8.8e-303 1043.1 655 78.9
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-302 1042.7 652 79.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 3.3e-302 1041.2 652 79.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 2.8e-301 1038.1 655 79.5
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.8e-301 1037.3 653 80.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.2e-286 989.6 650 75.1
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.0e-279 964.9 659 73.7
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.4e-276 956.1 651 72.8
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.4e-276 956.1 651 72.8
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.2e-276 954.9 651 72.7
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.0e-275 952.2 652 72.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.9e-274 948.0 654 72.6
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.6e-274 947.2 654 72.3
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.6e-272 941.4 659 71.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.4e-271 939.5 661 71.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.6e-270 935.3 662 71.0
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.9e-269 931.0 656 71.6
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 4.9e-269 931.0 654 71.7
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-268 929.9 654 71.7
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-268 929.5 656 71.5
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 3.2e-268 928.3 650 72.2
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.2e-268 928.3 656 71.5
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.2e-268 926.8 653 72.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 7.8e-267 923.7 656 70.6
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-266 922.5 654 72.3
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-266 922.5 656 71.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.9e-266 921.4 655 70.8
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 6.6e-266 920.6 654 72.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 6.6e-266 920.6 654 72.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.5e-265 919.5 658 69.9
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-265 919.1 656 70.9
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-265 917.9 656 70.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.2e-264 916.4 656 71.5
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.1e-264 915.6 656 70.9
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.2e-264 914.1 665 70.4
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 6.8e-263 910.6 656 70.9
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.8e-262 907.5 661 69.0
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 2.9e-261 905.2 657 70.8
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.1e-260 903.3 664 69.3
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 6.6e-258 894.0 652 69.2
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 4.3e-257 891.3 652 68.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 5.6e-257 891.0 663 68.8
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.2e-256 889.8 662 69.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 4.7e-256 887.9 652 68.4
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-255 886.7 656 70.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.4e-255 886.3 647 70.6
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 3.1e-255 885.2 653 69.5
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.2e-254 883.2 666 68.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.4e-252 876.3 617 71.2
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.7e-250 869.4 552 77.2
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 3.0e-250 868.6 608 71.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 5.1e-250 867.8 561 74.7
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.6e-248 861.7 666 68.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 6.2e-248 860.9 642 68.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.2e-248 860.9 666 68.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.1e-247 860.1 658 68.1
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 4.0e-247 858.2 617 70.5
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.2e-244 848.2 666 64.7
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.2e-244 848.2 666 64.7
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.7e-242 842.8 611 69.2
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.3e-242 842.4 561 74.2
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.3e-241 838.2 676 64.9
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 9.6e-241 837.0 697 62.7
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.6e-240 836.3 637 68.8
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.6e-240 835.1 581 71.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.8e-240 834.7 611 68.9
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 6.2e-240 834.3 554 72.4
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.6e-238 828.9 559 73.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.6e-238 828.9 559 73.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 4.9e-237 824.7 539 74.6
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 6.4e-237 824.3 676 64.5
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.6e-235 819.7 554 72.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.6e-235 818.1 531 75.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 4.3e-233 811.6 562 70.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.1e-232 809.3 675 63.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 6.2e-232 807.7 555 70.6
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.1e-231 805.4 562 70.5
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 4.0e-231 805.1 650 64.3
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 9.0e-231 803.9 573 70.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.4e-229 797.3 590 68.0
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 8.4e-229 797.3 627 64.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.8e-226 789.6 555 69.7
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.1e-225 786.9 551 70.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 5.6e-225 784.6 603 64.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.4e-223 780.0 664 61.3
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.8e-223 779.6 597 66.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 6.9e-223 777.7 553 70.3
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 9.0e-223 777.3 553 70.2
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 2.0e-222 776.2 553 70.0
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.6e-222 775.8 599 66.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 4.5e-222 775.0 660 61.5
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 7.6e-222 774.2 663 61.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 6.0e-219 764.6 565 66.5
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.5e-213 744.6 504 72.8
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 4.2e-212 741.9 614 64.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.1e-211 739.6 669 58.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.6e-211 738.4 556 67.4
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.3e-210 736.1 583 63.8
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 4.3e-209 731.9 612 60.6
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 8.2e-208 727.6 534 68.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.2e-206 723.8 668 57.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 2.6e-206 722.6 658 63.1
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 8.8e-202 707.6 557 65.2
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-201 707.2 657 58.8
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 6.9e-199 698.0 664 57.5
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 7.7e-198 694.5 532 67.7
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 2.4e-191 672.9 666 56.0
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.7e-190 667.9 603 59.0
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.9e-188 663.3 695 54.1
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 4.7e-187 658.7 616 58.1
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.8e-176 622.1 655 55.3
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.2e-170 602.1 592 54.6
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.3e-168 597.4 665 50.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 4.9e-168 595.5 508 63.0
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.7e-161 572.0 494 60.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.3e-157 560.1 430 64.9
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.2e-151 539.7 562 50.7
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.7e-150 536.6 543 54.1
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 2.4e-143 513.5 432 63.7
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.7e-133 480.7 340 69.1
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.5e-124 451.1 381 58.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.6e-123 447.6 406 56.2
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 2.6e-113 413.7 351 63.5
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.3e-107 394.8 290 66.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 5.3e-90 336.3 647 37.1
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.0e-88 332.0 428 47.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-72 276.9 625 33.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 7.5e-68 262.7 164 78.7
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 1.1e-50 205.7 218 50.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.6e-44 184.5 195 56.9
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 3.5e-41 174.1 152 55.9
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 8.9e-37 159.5 100 78.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.1e-31 142.5 295 31.2
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 6.2e-30 136.7 76 84.2
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 2.3e-24 118.2 101 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 8.4e-19 99.8 182 34.1
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.9e-18 98.6 134 43.3
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 7.6e-12 76.6 38 86.8
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 6.4e-11 73.6 154 37.0
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.5e-09 67.8 57 63.2


User provided reference genes

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