Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 2405.2 1241 100.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 2104.7 1256 86.5
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 2103.6 1258 86.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 2096.2 1257 86.0
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 2094.3 1257 85.6
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 2050.0 1256 84.6
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 2033.5 1256 83.4
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 2002.6 1255 82.6
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1998.0 1255 82.2
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1986.1 1254 81.8
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1985.7 1254 81.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1940.2 1254 80.4
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1935.6 1256 78.6
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1894.4 1188 82.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1748.0 1244 72.0
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1734.9 1276 70.4
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1734.5 1256 71.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1732.6 1249 71.6
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1731.8 1281 70.2
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1731.1 1253 70.8
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1728.4 1281 69.9
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1728.0 1281 69.9
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1254 71.3
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1721.1 1279 69.7
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1719.9 1281 70.0
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1718.4 1257 71.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1275 70.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1275 69.3
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1711.0 1293 68.9
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1701.0 1257 70.4
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1257 68.6
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1682.5 1259 68.6
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1682.2 1267 68.4
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1681.8 1282 68.3
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1680.2 1250 70.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1680.2 1273 69.4
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1676.0 1269 69.1
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1674.8 1259 68.2
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1674.8 1257 69.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1669.4 1276 67.8
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1276 68.9
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1667.5 1258 68.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1666.4 1274 68.1
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1264 67.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1259 68.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1663.7 1266 68.2
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1657.5 1275 68.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1653.6 1266 67.8
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1646.7 1275 66.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1646.7 1258 68.0
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1645.2 1274 66.6
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1644.8 1258 67.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1261 66.9
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1637.9 1253 67.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1328 64.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1635.9 1249 67.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1631.7 1233 68.3
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1273 65.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1626.3 1286 68.0
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1622.8 1292 65.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1620.9 1257 66.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1619.0 1255 65.8
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1609.7 1266 66.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1609.3 1282 65.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1326 64.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1236 68.4
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1252 66.1
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1259 65.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1321 63.8
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1271 64.9
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1281 64.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1591.6 1259 65.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1590.9 1326 63.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1588.2 1180 69.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1587.0 1263 65.5
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1585.1 1255 65.5
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1273 65.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1575.8 1173 68.4
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1573.9 1255 64.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1572.4 1256 65.3
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1568.9 1337 63.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1522.3 1275 63.1
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1504.6 1256 62.7
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1494.6 1182 66.8
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1478.0 1192 64.4
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1292 61.9
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1469.9 1269 61.9
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1417.5 1147 63.9
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1407.9 1232 61.4
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1402.5 1010 71.0
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1399.4 1253 58.7
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1390.6 1230 59.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1386.7 1279 58.5
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1369.0 1026 67.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1359.4 1248 58.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1218.0 1020 63.0
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1147.9 1223 53.0
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1146.0 888 66.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1139.4 1234 50.0
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1127.5 1260 49.2
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1108.6 971 59.9
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 8.4e-310 1067.4 949 62.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 2.5e-298 1029.2 888 61.5
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.5e-292 1008.8 678 76.3
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.3e-282 975.7 796 63.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.0e-279 966.5 1288 44.2
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.5e-274 949.5 817 61.6
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.1e-264 917.5 1226 44.5
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 5.0e-262 908.7 543 86.4
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.5e-253 879.8 603 76.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.2e-216 755.0 1321 37.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.9e-181 641.0 1400 33.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.9e-179 632.5 472 70.1
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.5e-175 620.2 1203 34.1
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.5e-168 596.3 600 53.5
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 2.3e-166 590.9 498 63.9
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 3.1e-147 527.3 641 48.2
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.7e-127 460.3 292 76.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.2e-122 445.7 1161 30.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 5.2e-118 430.3 284 75.7
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.0e-115 419.9 709 41.2
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.3e-97 362.5 245 78.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.2e-90 339.3 231 77.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.7e-90 338.2 338 53.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.6e-77 293.5 273 56.8
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 7.6e-77 293.5 273 56.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.8e-73 282.3 200 72.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 5.1e-73 280.8 243 60.1
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.7e-65 253.8 154 83.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 8.7e-49 200.3 104 90.4
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 9.7e-48 196.8 179 56.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 3.7e-47 194.9 175 60.6
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.1e-43 183.3 160 59.4
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 6.1e-42 177.6 134 74.6
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.6e-40 172.2 117 78.6
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.0e-32 146.0 113 71.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.6e-32 145.6 1180 21.9
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.3e-32 145.2 162 54.3
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.3e-23 116.7 227 37.9
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 4.2e-19 101.7 135 44.4
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 4.2e-19 101.7 95 53.7
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 8.0e-18 97.4 122 41.0
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.5e-16 93.2 114 43.0
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 4.4e-16 91.7 114 42.1
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 5.7e-16 91.3 120 45.0
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 9.1e-14 84.0 113 41.6
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 3.5e-13 82.0 123 43.1
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 5.9e-13 81.3 61 65.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.3e-12 80.1 71 64.8
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.1e-10 72.8 258 28.7
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.8e-10 72.4 113 37.2
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.4e-09 70.1 49 71.4
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 8.9e-09 67.4 47 72.3
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.7e-08 64.7 79 46.8
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 5.7e-08 64.7 157 36.9
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 5.4e-06 58.2 94 38.3


User provided reference genes

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