Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 0.0e+00 1835.5 923 100.0
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 0.0e+00 1501.5 924 84.4
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 0.0e+00 1482.2 924 83.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 0.0e+00 1470.7 923 83.1
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 0.0e+00 1467.2 924 82.6
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 0.0e+00 1458.7 923 82.7
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 0.0e+00 1458.4 923 82.2
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1363.2 920 77.7
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 0.0e+00 1362.4 934 76.3
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1359.4 924 78.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 0.0e+00 1351.3 925 77.5
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 0.0e+00 1347.8 924 76.9
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 0.0e+00 1295.8 925 76.1
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 0.0e+00 1291.9 930 75.8
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 0.0e+00 1284.2 925 74.6
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 0.0e+00 1252.3 918 74.4
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1230.3 938 68.6
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 0.0e+00 1230.3 964 69.7
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1226.1 940 68.4
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1223.0 938 68.1
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 0.0e+00 1221.5 937 68.3
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 0.0e+00 1216.8 930 68.2
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1216.4 935 67.6
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 0.0e+00 1215.7 935 67.6
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1209.1 935 67.4
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 0.0e+00 1208.4 934 67.8
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1196.0 935 66.5
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 0.0e+00 1194.1 939 67.8
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 0.0e+00 1183.7 934 66.2
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1179.9 931 66.2
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 0.0e+00 1179.5 937 66.4
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 0.0e+00 1179.1 940 65.9
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 0.0e+00 1177.9 932 66.1
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 0.0e+00 1174.1 926 66.8
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1172.5 931 66.2
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 0.0e+00 1170.6 929 65.3
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1168.7 938 65.1
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1168.3 938 65.4
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1168.3 932 66.2
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1167.1 939 64.9
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 0.0e+00 1161.7 935 66.5
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 0.0e+00 1160.6 925 67.0
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 0.0e+00 1160.2 937 64.5
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 0.0e+00 1159.8 933 65.3
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1158.3 939 64.6
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 0.0e+00 1157.5 935 65.6
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 0.0e+00 1157.5 954 64.8
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1157.5 939 64.3
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1154.8 931 65.0
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 0.0e+00 1154.8 933 64.7
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1151.7 932 64.7
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1151.3 938 64.9
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 0.0e+00 1151.0 933 64.7
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1147.9 932 64.5
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 0.0e+00 1146.7 933 64.1
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 0.0e+00 1146.7 933 64.4
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1145.6 932 64.9
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1145.6 937 63.7
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1144.0 935 64.3
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 0.0e+00 1143.3 953 63.8
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1142.1 935 64.6
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 0.0e+00 1141.7 917 64.4
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1134.4 932 64.6
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 0.0e+00 1131.7 925 65.8
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1131.3 939 64.2
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1131.3 932 64.4
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 0.0e+00 1127.1 931 63.8
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1121.7 933 63.7
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 0.0e+00 1120.1 922 64.4
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1119.4 927 63.9
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1118.2 932 63.4
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 0.0e+00 1117.8 937 63.0
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 0.0e+00 1117.4 962 62.0
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 0.0e+00 1115.9 941 63.0
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 0.0e+00 1114.4 941 62.8
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 0.0e+00 1113.2 929 62.3
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 0.0e+00 1110.9 933 63.6
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 0.0e+00 1094.7 947 61.5
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1091.6 933 62.2
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 0.0e+00 1086.6 917 63.8
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 0.0e+00 1083.9 824 69.4
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 0.0e+00 1081.6 941 61.7
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 0.0e+00 1079.7 938 61.2
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 0.0e+00 1078.5 930 62.3
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 0.0e+00 1077.8 932 61.9
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 0.0e+00 1075.5 922 61.9
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 6.3e-312 1074.3 931 62.0
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.2e-305 1053.1 994 58.6
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.6e-302 1042.7 895 61.7
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 2.8e-302 1042.0 943 60.6
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 5.3e-301 1037.7 937 60.2
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.2e-300 1036.6 864 63.3
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 8.2e-294 1013.8 934 58.2
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 5.3e-293 1011.1 823 65.1
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 9.4e-290 1000.3 908 59.0
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 2.7e-289 998.8 922 58.9
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 6.1e-289 997.7 801 65.5
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 1.1e-285 986.9 763 68.0
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.7e-281 971.5 1173 49.4
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 8.2e-278 960.7 755 67.0
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.1e-274 950.3 934 55.4
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 1.6e-273 946.4 727 67.8
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.4e-272 943.3 928 56.8
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 7.2e-266 921.0 941 55.0
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.2e-245 852.4 699 64.5
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 7.0e-245 851.3 920 51.6
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 5.0e-235 818.5 923 50.7
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 9.3e-197 691.4 933 46.1
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 9.6e-194 681.4 996 42.0
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 6.5e-190 668.7 1016 40.8
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.8e-184 650.6 928 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.1e-181 641.3 878 44.3
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 1.6e-177 627.5 532 62.6
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 1.1e-176 624.8 795 45.8
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 1.4e-165 587.8 877 42.2
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 4.2e-165 586.3 638 51.1
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.2e-148 531.6 587 52.5
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.0e-134 485.3 459 56.2
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 1.7e-126 458.0 480 55.8
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 7.1e-112 409.5 274 75.5
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.4e-107 394.4 428 50.9
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 2.3e-102 377.9 801 33.8
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 2.3e-102 377.9 299 64.9
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 2.0e-98 364.8 695 34.8
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.9e-72 278.5 302 52.0
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 1.3e-70 272.3 176 79.5
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 1.0e-65 256.1 224 60.3
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.7e-60 238.8 174 66.7
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 4.5e-58 230.7 203 57.6
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.7e-57 228.8 864 24.1
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 3.1e-43 181.4 144 63.9
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 6.1e-39 167.2 198 41.4
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.8e-38 165.6 105 80.0
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 4.8e-36 157.5 176 54.0
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 1.6e-34 152.5 184 47.3
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 4.5e-34 151.0 403 31.8
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 4.2e-32 144.4 188 46.8
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 4.1e-27 127.9 112 60.7
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 1.0e-25 123.2 95 61.1
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 2.9e-25 121.7 109 58.7
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 7.2e-24 117.1 564 21.5
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 1.6e-23 115.9 78 73.1
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 2.8e-23 115.2 75 66.7
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 1.8e-22 112.5 197 37.6
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 3.4e-21 108.2 82 64.6
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 7.5e-21 107.1 111 53.2
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.2e-20 105.5 69 73.9
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 3.7e-20 104.8 157 41.4
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 7.8e-18 97.1 71 73.2
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 5.0e-17 94.4 126 50.8
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 1.2e-15 89.7 110 49.1
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.4e-14 86.3 68 54.4
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 1.5e-13 82.8 98 46.9
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 1.3e-12 79.7 79 46.8
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 6.4e-12 77.4 134 38.1
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 1.9e-11 75.9 88 45.5
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 3.2e-11 75.1 67 50.7
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 5.4e-11 74.3 68 63.2
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 5.4e-11 74.3 220 23.6
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 3.5e-10 71.6 98 45.9
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 8.6e-09 67.0 72 45.8
Duzib151G0191 Durio zibethinus HOM05D000319 ORTHO05D000903 3.6e-07 61.6 208 24.5
FAN17G0542 Fragaria x ananassa HOM05D000319 ORTHO05D204892 1.1e-06 60.1 222 22.5
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 6.8e-06 57.4 45 64.4
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.9e-06 57.0 77 46.8
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 8.9e-06 57.0 37 67.6


User provided reference genes

Program Settings