Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.5e-236 822.4 407 100.0
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.4e-205 719.5 412 85.9
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 9.1e-205 716.8 412 84.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 9.1e-205 716.8 412 84.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 9.1e-205 716.8 412 84.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.2e-204 716.5 412 84.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.6e-204 716.1 412 84.5
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 2.7e-204 715.3 412 84.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-202 709.9 409 84.1
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 5.5e-202 707.6 410 84.6
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 8.8e-200 700.3 412 83.3
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.5e-194 682.2 410 80.7
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 2.2e-190 669.1 410 79.5
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 5.2e-184 647.9 412 78.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.3e-174 616.7 409 72.6
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 5.4e-173 611.3 409 72.4
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-172 610.1 409 72.1
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 2.1e-172 609.4 407 72.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 6.0e-172 607.8 407 71.7
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.3e-170 601.7 406 71.7
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 7.3e-170 600.9 409 70.4
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 7.3e-170 600.9 406 71.7
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 7.3e-170 600.9 406 71.7
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 3.6e-169 598.6 409 68.9
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 4.7e-169 598.2 410 70.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 3.1e-168 595.5 409 70.9
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 6.8e-168 594.3 409 70.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.9e-168 594.0 399 71.7
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 8.9e-168 594.0 409 68.9
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-167 593.6 399 71.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.2e-167 593.6 406 71.2
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.5e-167 593.2 407 70.3
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.5e-167 593.2 409 70.7
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.5e-167 593.2 406 71.2
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.0e-167 592.8 405 71.4
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.0e-167 592.8 409 69.4
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.6e-167 592.4 412 69.7
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 5.8e-167 591.3 409 69.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 7.5e-167 590.9 411 69.8
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 7.5e-167 590.9 409 71.6
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.2e-166 589.3 407 69.8
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.2e-166 589.3 406 70.9
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.2e-166 589.3 409 69.7
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.9e-166 589.0 409 68.7
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 6.4e-166 587.8 409 70.2
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 6.4e-166 587.8 409 67.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.9e-165 586.3 403 70.2
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.9e-165 586.3 409 68.7
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.1e-165 585.1 403 69.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 9.2e-165 583.9 409 69.9
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.1e-164 582.8 403 69.5
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.7e-164 582.4 409 67.5
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.0e-163 580.5 401 70.8
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 8.6e-163 577.4 408 68.4
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 1.1e-162 577.0 407 68.6
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 5.6e-162 574.7 409 68.2
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.6e-162 574.7 409 67.2
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 7.3e-162 574.3 409 66.5
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-161 573.5 409 69.9
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.8e-161 572.4 409 69.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.8e-161 572.4 408 68.1
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 4.7e-161 571.6 407 67.3
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 6.2e-161 571.2 407 69.0
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.1e-160 570.5 406 66.3
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 3.1e-160 568.9 409 69.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 4.0e-160 568.5 407 67.3
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 6.8e-160 567.8 402 67.7
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 8.9e-160 567.4 405 68.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.5e-159 566.6 409 68.0
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.0e-159 566.2 409 67.0
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.0e-159 566.2 409 66.7
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.6e-159 565.8 403 68.2
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 4.4e-159 565.1 406 67.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 7.6e-159 564.3 409 67.5
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.9e-158 562.4 403 68.2
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.9e-158 561.6 406 66.5
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 6.4e-158 561.2 408 66.4
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 2.4e-157 559.3 409 67.2
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.2e-157 558.9 409 67.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 4.2e-157 558.5 403 68.2
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 5.4e-157 558.1 402 66.2
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.4e-157 558.1 409 67.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 9.2e-157 557.4 409 66.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.2e-156 557.0 405 66.9
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.6e-156 556.6 409 68.0
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 1.0e-155 553.9 403 67.2
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.0e-155 553.9 410 65.4
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.0e-155 553.9 400 68.5
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.3e-155 553.5 409 66.5
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.3e-155 553.5 438 64.2
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.3e-155 552.7 407 66.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 2.3e-155 552.7 409 65.8
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.3e-155 552.7 405 64.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 6.6e-155 551.2 405 64.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.1e-154 550.4 405 66.2
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.5e-154 549.3 401 66.8
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 4.3e-154 548.5 406 67.2
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 4.3e-154 548.5 409 65.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 5.6e-154 548.1 402 66.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 7.3e-154 547.7 402 66.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 9.6e-154 547.4 401 66.6
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.2e-153 547.0 406 67.0
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 4.7e-153 545.0 424 64.4
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 4.7e-153 545.0 403 66.3
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.6e-148 530.0 405 64.2
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 7.8e-148 527.7 403 65.3
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.3e-146 522.3 493 55.4
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.0e-143 513.1 354 70.1
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.8e-143 511.5 361 68.7
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.4e-141 506.1 405 60.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.2e-141 505.4 406 60.6
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.6e-140 503.4 409 60.6
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 7.9e-140 501.1 408 61.8
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.9e-139 498.8 409 62.3
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 5.1e-139 498.4 405 58.8
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 7.6e-135 484.6 353 66.9
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.1e-133 480.7 403 56.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.5e-133 479.6 407 58.2
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 4.6e-132 475.3 312 74.0
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.3e-129 467.2 402 57.7
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.7e-124 449.5 315 68.6
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 3.3e-122 442.6 407 54.5
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 2.0e-119 433.3 416 51.4
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.5e-111 407.1 376 55.3
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 2.5e-109 399.8 292 65.4
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.1e-104 382.5 411 47.9
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.6e-103 379.8 312 59.0
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 3.5e-103 379.4 418 46.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.0e-99 367.9 273 64.1
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 3.5e-95 352.8 422 46.2
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.0e-91 339.3 267 63.7
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.5e-90 335.1 414 48.1
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.8e-89 333.2 411 44.5
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.0e-79 300.4 443 39.7
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 3.3e-77 293.1 252 60.7
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.4e-64 251.1 179 67.6
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 3.2e-64 250.0 161 72.7
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.0e-62 245.0 174 70.7
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.5e-61 241.1 213 55.4
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 6.8e-59 232.3 178 62.9
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 1.6e-55 221.1 178 60.1
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 3.0e-54 216.9 135 77.0
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.9e-53 214.2 348 37.9
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.5e-50 204.5 189 54.5
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.4e-48 198.0 148 63.5
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 5.4e-48 196.1 105 84.8
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 2.0e-42 177.6 101 82.2
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 5.6e-29 132.9 93 65.6
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 8.7e-22 109.0 97 60.8
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.5e-18 98.2 78 62.8
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 2.0e-18 97.8 304 25.0
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 1.0e-17 95.5 83 65.1
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 8.2e-12 75.9 57 63.2


User provided reference genes

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