Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 3.2e-157 558.5 317 100.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 4.9e-137 491.5 313 90.4
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 6.3e-137 491.1 311 90.7
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.6e-135 486.5 311 90.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 5.9e-135 484.6 313 88.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-134 483.8 313 88.5
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 6.6e-134 481.1 313 89.8
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.9e-133 479.6 312 88.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-132 475.3 314 87.3
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.3e-131 472.6 313 87.5
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.3e-131 472.6 313 87.5
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 5.2e-131 471.5 311 89.1
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-129 466.5 313 86.9
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 8.3e-129 464.2 312 86.9
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-124 448.4 304 86.8
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 3.4e-122 442.2 314 81.2
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.0e-119 433.0 306 84.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-118 430.6 304 84.9
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.1e-117 427.2 306 78.4
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.5e-117 426.8 311 73.3
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 4.3e-117 425.2 304 82.9
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 6.2e-116 421.4 314 70.4
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 314 70.4
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 5.2e-115 418.3 314 75.8
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.2e-115 418.3 312 72.8
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 6.8e-115 417.9 306 77.1
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.2e-114 417.2 306 72.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.5e-114 416.8 311 77.2
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.5e-114 416.8 314 70.1
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 5.8e-114 414.8 306 72.9
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 5.8e-114 414.8 306 72.9
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.7e-113 413.3 307 72.3
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.2e-113 412.9 306 71.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.9e-113 411.8 309 75.4
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.4e-112 410.2 311 76.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 2.4e-112 409.5 306 78.1
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.6e-111 405.2 316 69.3
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 6.0e-111 404.8 307 71.7
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 6.0e-111 404.8 307 72.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 6.0e-111 404.8 307 69.7
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 7.8e-111 404.4 309 69.3
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 7.8e-111 404.4 312 69.9
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.0e-110 404.1 312 72.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.1e-110 401.7 303 70.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.1e-109 400.6 309 69.3
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.1e-109 400.6 307 71.0
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-109 400.6 296 78.7
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.5e-109 400.2 306 75.2
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.9e-109 399.8 307 77.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.9e-109 399.8 306 69.0
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 3.3e-109 399.1 299 70.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.3e-109 398.7 307 69.7
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 5.6e-109 398.3 309 68.9
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.6e-109 398.3 307 69.7
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 5.6e-109 398.3 308 74.4
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.6e-108 396.7 305 69.5
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.6e-108 396.7 304 71.7
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.1e-108 396.4 307 69.7
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 2.1e-108 396.4 309 68.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.1e-108 396.4 297 78.5
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.8e-108 396.0 308 69.5
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.6e-108 395.6 311 68.8
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 4.7e-108 395.2 306 68.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 8.1e-108 394.4 308 69.5
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.3e-107 392.9 306 69.6
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.3e-107 392.9 304 69.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 4.0e-107 392.1 306 73.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.0e-107 392.1 308 69.2
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 6.8e-107 391.3 304 69.4
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 8.9e-107 391.0 304 70.4
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 8.9e-107 391.0 309 67.0
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 8.9e-107 391.0 304 69.7
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 8.9e-107 391.0 307 68.4
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.5e-106 390.2 309 73.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.5e-106 390.2 307 75.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.6e-106 389.4 303 69.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.4e-106 389.0 303 74.3
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.4e-106 389.0 306 68.6
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.4e-106 389.0 301 74.1
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.4e-106 388.7 307 75.9
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 5.8e-106 388.3 303 73.9
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 7.6e-106 387.9 296 69.3
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 9.9e-106 387.5 307 76.2
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.1e-104 384.0 297 78.1
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-104 383.6 314 74.5
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.2e-104 382.5 305 70.8
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.1e-104 381.3 314 74.5
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 9.2e-104 380.9 306 72.9
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.1e-103 379.8 306 70.3
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 7.8e-103 377.9 306 70.9
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.0e-102 377.5 306 71.6
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 3.0e-102 375.9 307 67.8
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.9e-102 375.6 303 75.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 6.6e-102 374.8 316 68.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.1e-101 374.0 308 67.5
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.1e-101 374.0 307 67.1
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.3e-101 372.5 305 70.5
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 4.3e-101 372.1 304 67.1
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.8e-100 369.4 307 65.1
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 3.6e-100 369.0 299 66.6
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.7e-100 368.6 305 69.5
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 4.7e-100 368.6 305 70.5
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 8.1e-100 367.9 304 67.8
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.4e-99 367.1 307 71.3
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-99 366.7 307 68.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.0e-98 363.2 320 62.2
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.2e-97 359.8 307 65.1
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 7.1e-96 354.8 308 64.6
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.1e-95 353.2 304 70.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 4.6e-95 352.1 308 65.3
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.1e-91 339.3 299 63.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.4e-90 335.9 307 62.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.1e-85 320.9 309 60.5
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 7.4e-85 318.2 247 66.8
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.7e-81 307.0 219 86.3
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 3.5e-79 299.3 248 64.9
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.9e-78 295.8 304 56.6
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.3e-77 292.7 311 56.3
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.6e-77 292.0 301 59.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.0e-74 283.5 218 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 9.0e-67 258.1 304 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.6e-66 256.5 304 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 5.5e-64 248.8 300 56.3
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.6e-60 237.3 218 63.3
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 2.2e-60 236.9 244 62.3
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.7e-58 228.4 301 54.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 4.2e-56 222.6 294 52.4
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 6.5e-49 198.7 321 44.5
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.8e-46 190.7 203 54.7
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.0e-45 187.2 256 48.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.8e-38 164.1 304 42.8
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 2.3e-38 163.7 298 36.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 3.0e-38 163.3 325 37.2
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.7e-36 156.4 126 63.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-36 156.0 128 62.5
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 2.4e-35 153.7 171 55.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 2.4e-35 153.7 171 55.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 2.4e-35 153.7 171 55.6
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.5e-32 143.7 134 61.2
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.1e-31 139.0 82 84.1
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 8.3e-28 128.6 88 72.7
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 8.6e-25 118.6 65 92.3
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 8.6e-25 118.6 133 48.9
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.2e-23 114.8 168 39.9
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 2.8e-23 113.6 66 86.4
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 5.2e-22 109.4 164 42.1
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.4e-21 106.7 235 35.3
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 5.7e-21 105.9 94 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.6e-18 97.8 181 43.6
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 3.8e-17 93.2 69 71.0
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-15 88.2 82 59.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 5.2e-14 82.8 76 59.2
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 3.4e-13 80.1 78 50.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.1e-11 75.1 76 55.3
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 5.0e-09 66.2 117 38.5
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.1e-07 60.8 40 72.5


User provided reference genes

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