Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.7e-160 569.3 302 100.0
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.5e-124 449.9 305 77.4
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 3.8e-123 445.3 311 75.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.6e-121 439.9 310 76.8
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.6e-121 438.7 303 76.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.3e-120 436.0 311 76.5
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 2.3e-120 436.0 305 75.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.3e-119 432.2 304 75.0
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.3e-119 432.2 304 75.0
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.4e-119 431.0 311 73.6
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 9.7e-119 430.6 303 74.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.8e-118 429.1 304 74.3
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 2.8e-118 429.1 303 74.6
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.7e-110 402.1 304 72.0
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.7e-110 402.1 312 72.1
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-109 400.2 301 71.1
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.2e-108 397.1 304 71.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.6e-108 396.0 304 71.1
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 8.5e-107 391.0 304 70.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.5e-106 389.4 300 71.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 8.0e-105 384.4 302 69.9
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.0e-104 384.0 304 69.1
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 4.0e-104 382.1 302 69.9
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 8.8e-104 380.9 302 70.2
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 8.8e-104 380.9 302 70.2
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 6.3e-102 374.8 302 67.9
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 5.3e-101 371.7 306 67.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 9.4e-98 360.9 307 63.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.2e-97 360.5 307 63.5
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.6e-97 359.0 259 69.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 5.2e-96 355.1 296 62.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 5.2e-96 355.1 281 64.1
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.5e-95 353.6 313 61.7
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.5e-95 353.6 261 67.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.6e-95 352.8 241 71.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.8e-94 349.4 259 66.4
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.7e-94 349.0 259 66.0
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 8.3e-94 347.8 282 64.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.1e-93 347.4 252 67.5
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.4e-93 347.1 283 63.6
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.8e-93 346.7 304 60.2
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 4.1e-93 345.5 259 67.2
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 7.0e-93 344.7 303 60.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 7.0e-93 344.7 258 67.4
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 7.0e-93 344.7 254 66.5
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 7.0e-93 344.7 261 67.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.6e-92 343.6 284 62.3
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.6e-92 343.6 301 60.5
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.6e-92 343.6 281 62.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.0e-92 343.2 284 62.3
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 2.0e-92 343.2 309 60.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 4.5e-92 342.0 304 59.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 5.9e-92 341.7 259 66.8
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.9e-92 341.7 301 60.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 5.9e-92 341.7 301 60.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.3e-91 340.5 296 61.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.7e-91 340.1 255 67.5
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.7e-91 340.1 282 62.4
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.9e-91 339.3 282 62.1
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 8.5e-91 337.8 267 64.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 8.5e-91 337.8 245 69.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.1e-90 337.4 314 59.9
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.1e-90 337.4 297 60.9
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.5e-90 337.0 306 59.5
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.5e-90 337.0 259 64.5
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.5e-90 337.0 294 59.9
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.9e-90 336.7 296 62.2
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.9e-90 336.7 301 60.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 4.2e-90 335.5 311 59.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 4.2e-90 335.5 304 59.2
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 7.2e-90 334.7 261 65.1
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.2e-89 334.0 261 64.8
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.1e-89 333.2 281 63.0
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.7e-89 332.8 252 66.3
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.7e-89 332.8 293 62.5
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.7e-89 332.0 309 59.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.7e-89 332.0 245 67.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 6.1e-89 331.6 256 64.8
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 6.1e-89 331.6 265 64.5
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.8e-88 328.2 252 65.1
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.8e-88 327.8 285 61.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 8.8e-88 327.8 269 62.5
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.2e-87 327.4 242 67.4
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.5e-87 327.0 285 59.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.7e-87 325.1 254 65.4
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 9.8e-87 324.3 267 62.9
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 9.8e-87 324.3 267 62.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.3e-86 323.9 259 64.9
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.2e-86 323.2 260 64.2
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.2e-86 323.2 270 60.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 4.9e-86 322.0 288 56.9
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-85 320.9 286 59.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 2.4e-85 319.7 265 62.3
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.1e-85 319.3 245 66.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.1e-85 318.9 229 69.4
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 5.4e-85 318.5 245 66.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.6e-84 317.0 307 57.3
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 2.3e-83 313.2 236 64.4
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.6e-83 311.2 363 49.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.3e-82 309.3 236 64.0
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 4.2e-82 308.9 236 64.4
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 9.5e-82 307.8 256 60.5
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 9.5e-82 307.8 246 62.6
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.2e-81 307.4 264 61.0
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.1e-81 306.6 266 60.9
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 8.0e-81 304.7 263 61.6
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.0e-80 302.8 223 71.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 3.0e-80 302.8 315 53.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 8.9e-80 301.2 238 60.5
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.0e-79 300.1 292 57.2
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.6e-79 299.7 262 58.8
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.2e-78 296.6 246 61.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.4e-77 293.9 246 60.2
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.0e-77 291.6 268 57.5
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.6e-76 290.4 257 59.1
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.6e-76 290.4 230 63.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.6e-76 290.4 247 60.7
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.5e-76 289.3 266 57.5
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.3e-75 287.3 220 65.9
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 6.6e-75 285.0 260 57.7
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.5e-74 283.9 332 48.2
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-74 282.7 252 58.3
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 3.3e-74 282.7 246 56.5
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 5.6e-74 282.0 259 59.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 8.0e-73 278.1 252 60.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.7e-70 270.4 219 58.0
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.2e-70 270.0 328 48.5
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-70 270.0 275 51.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.9e-70 268.9 330 47.9
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.9e-69 266.9 246 55.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.2e-69 266.2 241 57.7
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.9e-67 259.2 227 60.8
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 5.8e-63 245.4 255 54.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.6e-58 228.8 286 41.3
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.6e-57 227.3 273 44.0
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.6e-55 219.9 402 36.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.4e-54 215.3 163 61.3
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 9.2e-53 211.5 239 43.5
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 3.0e-51 206.5 186 60.8
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-50 204.5 217 52.5
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 4.3e-50 202.6 231 43.7
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.1e-48 196.4 257 44.0
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-46 191.0 131 71.8
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 5.1e-43 179.1 172 49.4
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-40 171.4 143 57.3
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 9.0e-32 141.7 112 58.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 7.9e-28 128.6 152 46.7
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 8.7e-19 98.6 107 45.8
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.3e-18 96.7 63 74.6
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.3e-18 96.7 76 59.2
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 7.2e-13 79.0 70 47.1
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.8e-11 74.3 58 58.6
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.0e-11 73.6 73 52.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.5e-10 71.2 188 33.5
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-08 65.1 52 59.6
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 3.1e-08 63.5 103 38.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 6.9e-08 62.4 106 34.9


User provided reference genes

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