Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.0e-79 298.1 163 100.0
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-56 222.6 167 71.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-56 222.2 166 71.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.8e-56 222.2 176 69.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 6.3e-56 221.1 173 70.5
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-55 219.9 173 69.9
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-54 216.9 162 71.6
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-54 216.9 163 72.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-53 213.0 160 71.2
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.7e-53 213.0 164 70.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-53 213.0 160 71.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.9e-53 212.2 163 70.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-52 209.5 165 70.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.5e-52 209.1 166 68.1
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-51 205.7 175 65.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 8.0e-51 204.1 170 68.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-50 203.8 155 71.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-50 202.6 162 67.3
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-50 201.8 156 69.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.3e-48 194.5 164 66.5
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-46 188.3 161 64.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.2e-43 180.3 197 54.3
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 6.8e-34 147.9 188 47.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.6e-33 146.0 171 55.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 9.8e-33 144.1 174 46.6
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.7e-32 143.3 185 48.1
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.7e-32 143.3 185 49.2
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.8e-32 141.7 187 48.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 6.3e-32 141.4 174 53.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.3e-32 141.4 174 53.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 8.3e-32 141.0 174 46.0
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-31 140.6 170 53.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-31 140.2 185 46.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.4e-31 139.4 178 52.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.4e-31 139.4 181 46.4
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.4e-31 139.4 178 47.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.1e-31 139.0 191 44.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.1e-31 139.0 182 46.2
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.1e-31 138.7 191 44.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.1e-31 138.7 191 44.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 5.4e-31 138.3 173 52.0
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.4e-31 138.3 180 48.3
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.2e-30 137.1 185 45.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-30 136.7 175 50.3
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.6e-30 136.7 182 46.2
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.6e-30 136.7 182 47.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.0e-30 136.3 186 48.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.0e-30 136.3 182 48.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-30 136.0 172 51.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.5e-30 135.6 187 44.9
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.9e-30 134.8 195 44.6
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 7.7e-30 134.4 180 45.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-29 134.0 195 44.6
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-29 133.7 172 51.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-29 133.7 160 53.1
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.7e-29 133.3 187 44.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-29 133.3 174 44.8
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.7e-29 133.3 175 45.1
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-29 132.9 172 50.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.3e-29 132.9 180 45.6
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.3e-29 132.9 173 48.0
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.9e-29 132.5 186 43.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.8e-29 132.1 187 46.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.8e-29 132.1 184 45.7
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-29 132.1 195 44.1
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.8e-29 132.1 180 44.4
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.8e-29 132.1 179 46.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.8e-29 132.1 169 47.9
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.0e-29 131.7 193 42.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 5.0e-29 131.7 186 46.8
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 6.6e-29 131.3 178 47.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.1e-28 130.6 187 43.9
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-28 130.6 187 43.9
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-28 130.6 187 43.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-28 130.6 179 46.4
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.1e-28 130.6 180 43.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-28 130.2 174 50.0
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.9e-28 129.8 169 46.7
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.5e-28 129.4 166 48.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.2e-28 128.6 179 45.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.2e-28 128.6 173 45.1
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.2e-28 128.6 186 45.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 5.5e-28 128.3 183 49.2
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.2e-28 127.9 174 47.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 9.5e-28 127.5 172 46.5
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.2e-27 127.1 179 43.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-27 127.1 183 45.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.2e-27 127.1 187 43.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.6e-27 126.7 200 40.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.6e-27 126.7 186 46.8
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.1e-27 126.3 177 44.6
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.8e-27 125.9 175 45.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-27 125.9 183 44.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.0e-27 124.4 160 46.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 8.0e-27 124.4 174 44.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.0e-26 124.0 194 42.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.8e-26 123.2 176 44.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-26 123.2 196 41.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.3e-26 122.9 197 40.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.2e-26 121.7 145 48.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 5.2e-26 121.7 180 43.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 5.2e-26 121.7 187 46.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.8e-26 121.3 198 39.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.9e-26 120.9 170 48.8
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.9e-26 120.9 166 44.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.9e-26 120.9 178 42.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.2e-25 120.6 181 46.4
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.2e-25 120.6 185 42.7
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.5e-25 120.2 172 46.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.0e-25 119.8 197 40.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.6e-25 119.4 191 42.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.6e-25 119.4 193 42.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 4.4e-25 118.6 195 41.0
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.7e-25 118.2 167 46.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.7e-25 118.2 167 46.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.5e-25 117.9 186 43.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.8e-25 117.5 179 44.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.3e-24 117.1 182 44.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.3e-24 117.1 188 39.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.7e-24 116.7 167 43.1
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.7e-24 116.7 182 44.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-24 116.7 172 41.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.7e-24 116.7 186 42.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.7e-24 116.7 182 43.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.7e-24 116.7 176 42.0
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.2e-24 116.3 185 42.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-24 116.3 188 42.0
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.2e-24 116.3 212 41.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.2e-24 116.3 184 45.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.2e-24 116.3 179 40.2
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 2.8e-24 115.9 186 43.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.8e-24 115.9 171 43.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.7e-24 115.5 177 44.6
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-24 115.2 183 42.6
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 6.3e-24 114.8 183 42.6
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 6.3e-24 114.8 201 40.3
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.3e-24 114.8 121 53.7
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 8.3e-24 114.4 210 39.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-23 114.0 178 43.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.4e-23 112.8 207 40.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.4e-23 112.8 179 41.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.4e-23 112.8 163 45.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.1e-23 112.1 181 42.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.1e-23 112.1 179 43.6
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 9.2e-23 110.9 116 50.9
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.2e-22 110.5 175 42.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.2e-22 110.5 156 44.2
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.7e-22 109.4 186 38.7
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.0e-21 107.5 184 34.8
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.7e-21 106.7 198 35.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.7e-21 106.7 194 37.6
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-21 106.7 143 43.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 8.6e-21 104.4 192 38.5
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-20 103.6 191 41.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-20 103.6 191 41.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.5e-20 103.6 175 38.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-20 103.2 192 41.1
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 3.3e-20 102.4 186 38.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 7.3e-20 101.3 194 36.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.1e-19 99.8 177 39.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.0e-18 97.4 127 43.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.4e-18 97.1 146 40.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.8e-18 96.7 153 37.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 5.2e-18 95.1 166 39.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.2e-18 95.1 180 38.3
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.9e-18 94.4 147 41.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-16 90.5 109 48.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.3e-16 90.5 164 41.5
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-16 89.7 146 37.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.4e-15 86.3 155 38.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.2e-15 84.3 101 48.5
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-14 83.6 139 38.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.0e-14 81.6 139 38.1
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.3e-13 80.5 113 44.2
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.6e-12 75.1 183 33.3
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 9.5e-12 74.3 176 34.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-11 73.9 156 32.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.3e-10 69.7 83 50.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.3e-10 69.7 62 56.5
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.4e-09 65.5 59 55.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.8e-09 65.1 155 29.7
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.3e-08 61.2 73 47.9
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.5e-06 55.8 37 67.6
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 4.6e-06 55.5 42 64.3


User provided reference genes

Program Settings