Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 5.0e-137 491.1 251 100.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.3e-87 327.0 250 70.4
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.2e-87 324.7 253 69.6
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.9e-84 315.8 254 68.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.3e-81 307.0 255 67.5
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.8e-81 306.6 254 68.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 8.1e-79 297.7 254 66.5
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-76 290.4 255 65.1
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.2e-75 285.8 252 63.9
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.2e-75 285.8 257 63.4
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 5.5e-75 285.0 245 64.9
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.1e-74 283.1 245 64.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.1e-74 283.1 245 64.9
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.7e-74 282.7 251 64.9
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 3.5e-74 282.3 251 64.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 3.3e-72 275.8 250 62.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 6.2e-71 271.6 247 61.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 5.3e-70 268.5 236 62.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 5.3e-70 268.5 236 62.7
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.4e-69 265.8 241 61.8
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.4e-69 265.8 241 61.8
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.9e-68 262.7 234 61.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.1e-43 181.0 217 47.5
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 2.7e-42 176.4 263 44.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.3e-41 173.3 252 42.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.4e-40 169.1 258 43.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.4e-40 169.1 258 43.4
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.7e-39 166.0 176 49.4
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.8e-39 165.6 265 41.1
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 8.2e-39 164.9 204 49.5
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 8.2e-39 164.9 204 49.5
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.2e-39 164.9 202 48.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-38 163.3 204 45.6
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.1e-38 162.5 201 50.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.1e-38 162.5 201 50.2
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 5.3e-38 162.2 260 42.3
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.1e-38 161.4 183 49.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 9.1e-38 161.4 172 47.7
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.2e-37 161.0 163 48.5
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.2e-37 161.0 180 48.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.2e-37 161.0 252 41.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.6e-37 160.6 169 52.1
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.6e-37 160.6 166 53.0
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.5e-37 159.5 194 43.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 3.5e-37 159.5 230 40.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 5.9e-37 158.7 229 41.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.9e-37 158.7 229 41.5
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 7.7e-37 158.3 239 42.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 7.7e-37 158.3 240 45.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 7.7e-37 158.3 174 46.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.7e-36 157.1 229 46.3
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.2e-36 156.8 180 47.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.9e-36 156.4 234 42.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 3.8e-36 156.0 251 39.4
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.8e-36 156.0 161 52.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.0e-36 155.6 163 51.5
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 6.5e-36 155.2 177 49.7
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 6.5e-36 155.2 228 40.4
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 8.5e-36 154.8 256 40.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.1e-35 154.5 163 50.9
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-35 154.1 163 50.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.5e-35 154.1 254 40.9
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.5e-35 153.3 162 50.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 4.2e-35 152.5 218 43.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.2e-35 151.8 176 46.0
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 9.4e-35 151.4 198 42.9
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 9.4e-35 151.4 162 50.0
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.2e-34 151.0 215 43.7
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-34 151.0 174 46.0
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.6e-34 150.6 171 52.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.1e-34 150.2 167 50.3
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.1e-34 150.2 208 43.8
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 6.1e-34 148.7 184 45.1
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 8.0e-34 148.3 176 48.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.0e-33 147.9 168 42.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.0e-33 147.9 224 44.2
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.4e-33 147.5 199 44.2
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.4e-33 147.5 166 47.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 3.0e-33 146.4 161 44.7
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.0e-33 146.4 186 48.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 5.2e-33 145.6 220 37.3
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 6.8e-33 145.2 202 46.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 8.8e-33 144.8 179 44.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.2e-32 144.4 170 46.5
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.5e-32 144.1 235 39.6
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.5e-32 144.1 175 41.1
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.6e-32 143.3 169 47.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 5.7e-32 142.1 169 45.6
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 9.8e-32 141.4 184 45.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.2e-31 140.2 221 37.1
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 3.7e-31 139.4 161 44.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 6.3e-31 138.7 190 40.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.1e-30 137.9 160 46.2
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.1e-30 137.9 204 39.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.8e-30 137.1 219 37.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.4e-30 136.7 219 37.4
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 9.1e-30 134.8 163 41.7
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.2e-29 134.4 158 48.7
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.0e-29 133.7 180 44.4
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.7e-29 133.3 160 42.5
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.7e-29 133.3 207 36.2
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.5e-29 132.9 174 45.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 3.5e-29 132.9 224 41.1
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.9e-29 132.1 260 36.9
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.9e-29 132.1 260 36.9
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 7.7e-29 131.7 156 46.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.9e-27 127.1 166 42.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.5e-27 126.7 167 41.9
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-27 126.3 245 33.9
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.2e-27 126.3 169 42.0
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 4.2e-27 125.9 180 37.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.2e-27 125.9 173 43.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.2e-27 125.2 224 35.3
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 2.7e-26 123.2 177 39.5
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.7e-26 122.5 156 43.6
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 6.1e-26 122.1 176 39.2
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.0e-25 121.3 170 43.5
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.8e-25 120.6 183 37.2
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-25 120.2 183 38.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 6.8e-25 118.6 180 38.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 6.8e-25 118.6 163 40.5
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.2e-24 117.9 170 39.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.0e-24 117.1 225 35.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 2.6e-24 116.7 128 47.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 9.8e-24 114.8 176 37.5
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.7e-23 114.0 166 39.8
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 3.7e-23 112.8 178 41.0
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.9e-23 112.5 146 44.5
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.9e-23 112.5 166 37.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 6.3e-23 112.1 162 42.0
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.1e-22 109.8 165 41.2
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.0e-22 108.6 177 34.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 7.0e-22 108.6 177 34.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-21 107.1 125 44.8
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.7e-21 106.7 189 36.0
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.7e-21 106.7 125 44.8
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 4.5e-21 105.9 180 35.6
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 5.9e-21 105.5 242 33.5
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.7e-21 105.1 128 45.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 7.7e-21 105.1 167 39.5
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 8.6e-20 101.7 159 37.7
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 8.6e-20 101.7 161 36.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.9e-19 100.5 166 40.4
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.8e-18 96.7 161 35.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.6e-18 96.3 161 33.5
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 3.6e-18 96.3 164 37.2
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 6.1e-18 95.5 163 37.4
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 8.0e-18 95.1 235 31.1
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.0e-17 92.8 164 36.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.4e-16 89.4 160 36.2
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.8e-16 88.2 172 32.6
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.2e-15 87.0 169 33.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.0e-14 82.0 94 43.6
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.0e-13 80.5 89 43.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.5e-13 79.7 146 32.2
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.5e-13 79.7 161 32.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.6e-13 79.3 191 30.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.3e-12 77.0 168 31.5
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 5.6e-11 72.4 64 56.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.1e-10 70.5 122 33.6
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 2.1e-10 70.5 71 53.5
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.4e-09 67.8 159 32.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 4.0e-09 66.2 114 36.0
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.6e-08 63.5 78 41.0
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.9e-07 59.3 72 37.5


User provided reference genes

Program Settings