Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 3759.1 1920 100.0
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 3235.3 1925 85.9
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 3233.7 1923 85.6
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 3231.4 1923 86.5
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 3219.1 1923 85.9
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 3210.2 1923 85.8
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 3200.2 1919 86.0
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3113.6 1950 82.9
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3110.9 1922 83.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3100.8 1919 83.6
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3063.1 1967 81.5
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3056.5 1916 82.9
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 3046.1 1947 81.8
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 3045.0 1961 81.1
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 3030.4 1917 82.3
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 2831.2 1913 78.4
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2810.8 1933 75.9
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2640.5 1931 71.9
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2340.5 2004 62.8
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2327.0 2000 62.1
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2318.9 2056 60.8
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2299.2 2006 61.8
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2296.9 2030 61.1
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2278.4 2007 61.3
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2275.0 2043 60.5
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2247.2 2008 61.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2244.5 1997 60.8
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2238.0 1981 61.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2234.9 2005 60.8
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2232.2 1984 61.4
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2231.4 2006 59.8
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2225.7 1996 61.2
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2216.0 2013 59.1
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2211.0 2135 57.9
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2169.0 1988 60.1
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2166.7 2019 58.1
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2165.6 1990 59.8
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2160.6 1995 59.3
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2160.2 2001 59.4
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2157.9 1996 59.5
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2154.0 2010 59.2
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2150.2 2003 58.9
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2147.1 1993 59.2
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2145.2 2005 59.1
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2135.9 2001 59.2
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2135.5 1989 58.2
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2134.8 2072 57.7
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2126.3 2016 58.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2112.4 1995 58.3
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2110.9 2002 58.0
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2103.9 1992 58.6
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2090.1 1984 58.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2083.9 1984 57.8
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2079.7 1987 58.5
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2078.1 2005 57.8
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2070.0 2007 57.9
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2068.1 2110 54.7
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 2002 56.6
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2067.4 2047 57.1
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2063.5 2005 57.6
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2023.1 1989 56.5
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2013.4 1992 56.9
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2008.8 2026 55.5
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2008.4 2003 54.8
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2006.1 2015 56.3
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2001.5 2023 55.5
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1995.3 1975 55.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1991.9 2100 53.6
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1989.2 1985 54.8
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1988.8 2013 55.3
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1985.3 1857 58.5
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1978.4 1998 55.9
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1975.7 2023 56.1
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1963.3 2027 54.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1950.3 2074 53.2
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1944.1 2006 54.0
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1941.0 1969 55.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1937.5 2027 54.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1935.6 2069 54.0
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1866.3 1973 53.2
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1847.4 2002 51.2
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1831.6 1687 59.3
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1831.2 2007 53.1
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1790.4 2014 51.8
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1790.4 2150 49.9
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1748.4 1868 52.8
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1723.4 1884 53.1
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1651.7 2025 49.4
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1638.2 1769 51.6
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1608.6 1671 54.1
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1568.1 1459 60.5
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1531.9 1743 50.7
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1486.5 1983 46.3
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1472.6 1485 55.2
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1440.2 1692 50.6
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1402.9 1378 56.0
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1308.1 1230 57.8
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1207.2 1929 40.2
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1163.3 2042 39.1
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1139.4 1542 43.2
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1132.5 1188 54.5
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1098.2 1406 45.5
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1092.8 1187 53.1
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 2.4e-308 1063.1 777 70.4
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 8.2e-296 1021.5 777 68.6
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 3.9e-274 949.5 776 63.9
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.2e-249 868.2 1023 48.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 4.9e-248 862.8 835 54.7
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.6e-243 847.8 973 49.8
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.7e-238 830.5 2159 31.8
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 8.1e-227 792.3 2168 31.0
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.5e-212 744.2 1182 40.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 9.3e-199 699.1 1272 38.6
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 5.1e-181 640.2 1006 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 4.8e-179 633.6 1996 30.8
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 4.6e-166 590.5 415 69.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.5e-159 568.2 1909 28.7
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-149 535.4 1623 29.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.2e-148 532.7 643 49.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 7.5e-148 530.0 545 54.3
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.4e-146 525.0 581 50.1
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.6e-126 459.1 319 69.0
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 6.6e-120 437.2 509 50.7
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.2e-98 363.6 322 60.9
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.3e-96 359.0 484 44.8
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.0e-92 345.9 377 50.7
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.4e-92 344.7 764 35.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.7e-91 342.8 357 50.4
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 8.7e-88 330.5 219 72.6
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.4e-82 313.2 283 58.7
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.6e-78 299.7 210 68.6
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 9.9e-76 290.4 195 72.3
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 4.9e-75 288.1 385 50.4
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.1e-73 282.7 242 60.7
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 3.9e-64 251.9 165 71.5
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.4e-61 243.4 162 71.0
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-59 236.1 1108 26.4
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.6e-57 228.4 159 68.6
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.4e-52 212.2 164 64.0
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-50 207.2 256 49.2
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 2.5e-50 206.1 258 47.7
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.6e-49 203.4 292 44.2
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 8.2e-46 191.0 195 56.4
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 7.7e-44 184.5 318 39.0
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.8e-43 182.2 125 64.8
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 6.5e-43 181.4 379 37.2
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-38 166.0 213 47.9
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 4.8e-38 165.2 388 36.9
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 8.2e-38 164.5 119 74.8
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.0e-37 161.4 322 35.4
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.1e-34 154.1 576 27.8
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 1.3e-30 140.6 130 60.8
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.0e-27 131.0 90 67.8
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.5e-27 127.9 57 91.2
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 2.7e-25 122.9 444 32.7
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 5.9e-20 105.1 110 53.6
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 5.9e-20 105.1 110 53.6
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 2.1e-17 96.7 108 50.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.1e-17 96.7 153 42.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 4.7e-17 95.5 182 37.9
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 8.9e-16 91.3 69 60.9
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.6e-15 89.7 67 67.2
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 2.6e-15 89.7 113 42.5
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 9.8e-15 87.8 75 58.7
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 9.8e-15 87.8 75 58.7
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.6e-09 69.3 145 35.9
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 6.1e-09 68.6 126 38.1
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.8e-08 67.0 80 45.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 6.8e-08 65.1 48 64.6
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 4.4e-07 62.4 124 39.5
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 2.2e-06 60.1 31 90.3
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 2.9e-06 59.7 85 40.0


User provided reference genes

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