Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044675 Chenopodium quinoa HOM05D003510 ORTHO05D004144 7.4e-50 200.3 105 100.0
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.1e-32 141.7 77 93.5
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.1e-32 141.7 77 93.5
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.1e-32 141.7 77 93.5
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.1e-32 141.7 77 93.5
AUR62022280 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.5e-29 132.9 75 88.0
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 1.1e-21 106.7 72 66.7
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 5.5e-21 104.4 72 70.8
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 5.5e-21 104.4 70 71.4
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 5.5e-21 104.4 72 66.7
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 9.4e-21 103.6 72 68.1
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 1.2e-20 103.2 72 66.7
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 2.1e-20 102.4 71 64.8
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 2.7e-20 102.1 72 66.7
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 3.6e-20 101.7 70 68.6
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 3.6e-20 101.7 73 64.4
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 4.7e-20 101.3 72 63.9
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 6.1e-20 100.9 72 62.5
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 6.1e-20 100.9 72 65.3
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 8.0e-20 100.5 72 65.3
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 1.0e-19 100.1 72 63.9
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 1.0e-19 100.1 72 62.5
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 1.8e-19 99.4 72 63.9
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 2.3e-19 99.0 71 62.0
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 2.3e-19 99.0 72 65.3
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 3.0e-19 98.6 86 59.3
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 3.0e-19 98.6 72 61.1
Nn4g23884 Nelumbo nucifera HOM05D003510 ORTHO05D004144 3.0e-19 98.6 72 65.3
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 3.0e-19 98.6 72 63.9
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 4.0e-19 98.2 72 62.5
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 5.2e-19 97.8 72 63.9
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 6.8e-19 97.4 72 61.1
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 6.8e-19 97.4 62 69.4
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 6.8e-19 97.4 72 61.1
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 6.8e-19 97.4 67 70.1
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 6.8e-19 97.4 63 69.8
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 8.8e-19 97.1 71 63.4
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 8.8e-19 97.1 72 62.5
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 8.8e-19 97.1 63 66.7
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 8.8e-19 97.1 69 65.2
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.2e-18 96.7 72 62.5
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.2e-18 96.7 68 64.7
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 1.5e-18 96.3 67 64.2
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.5e-18 96.3 71 62.0
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.6e-18 95.5 72 61.1
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 3.4e-18 95.1 69 62.3
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 3.4e-18 95.1 70 62.9
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.4e-18 95.1 72 62.5
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 3.4e-18 95.1 72 61.1
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 4.4e-18 94.7 71 60.6
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 4.4e-18 94.7 71 57.7
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 4.4e-18 94.7 72 59.7
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 4.4e-18 94.7 67 67.2
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 5.7e-18 94.4 61 72.1
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 7.5e-18 94.0 74 62.2
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 9.8e-18 93.6 72 61.1
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 9.8e-18 93.6 73 60.3
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 9.8e-18 93.6 73 60.3
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 1.3e-17 93.2 70 61.4
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 1.3e-17 93.2 70 61.4
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.7e-17 92.8 72 59.7
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.7e-17 92.8 73 58.9
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 2.2e-17 92.4 71 60.6
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 2.8e-17 92.0 72 61.1
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 2.8e-17 92.0 74 59.5
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 4.8e-17 91.3 72 56.9
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 6.3e-17 90.9 67 62.7
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 6.3e-17 90.9 78 48.7
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 6.3e-17 90.9 71 63.4
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 6.3e-17 90.9 66 65.2
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 6.3e-17 90.9 72 58.3
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 8.3e-17 90.5 73 61.6
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 8.3e-17 90.5 71 60.6
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 1.4e-16 89.7 72 55.6
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 1.4e-16 89.7 56 75.0
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.4e-16 89.7 73 58.9
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 1.4e-16 89.7 71 62.0
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.4e-16 89.7 65 66.2
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.4e-16 89.7 65 66.2
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.8e-16 89.4 72 55.6
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.8e-16 89.4 71 59.2
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.8e-16 89.4 71 59.2
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 3.1e-16 88.6 65 63.1
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 3.1e-16 88.6 71 56.3
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 3.1e-16 88.6 72 58.3
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 3.1e-16 88.6 73 57.5
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 3.1e-16 88.6 73 57.5
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 4.1e-16 88.2 73 56.2
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 5.4e-16 87.8 59 69.5
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 5.4e-16 87.8 60 65.0
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 7.0e-16 87.4 72 56.9
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 9.1e-16 87.0 76 53.9
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 9.1e-16 87.0 73 56.2
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 9.1e-16 87.0 65 66.2
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 9.1e-16 87.0 70 55.7
SEGI_33057 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 9.1e-16 87.0 70 55.7
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.2e-15 86.7 71 59.2
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 1.2e-15 86.7 69 59.4
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 1.6e-15 86.3 72 56.9
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 2.0e-15 85.9 72 54.2
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 2.0e-15 85.9 73 57.5
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.7e-15 85.5 72 52.8
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 3.5e-15 85.1 74 56.8
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.5e-15 84.7 72 51.4
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 5.9e-15 84.3 63 65.1
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 7.7e-15 84.0 72 54.2
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 7.7e-15 84.0 78 52.6
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 1.0e-14 83.6 72 54.2
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 1.0e-14 83.6 72 54.2
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 1.0e-14 83.6 63 58.7
Gorai.012G122300 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.7e-14 82.8 71 54.9
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 1.7e-14 82.8 65 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 2.2e-14 82.4 70 55.7
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.2e-14 82.4 62 62.9
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 2.2e-14 82.4 73 52.1
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 2.2e-14 82.4 73 52.1
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 2.2e-14 82.4 67 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 3.8e-14 81.6 70 55.7
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.8e-14 81.6 72 52.8
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 3.8e-14 81.6 98 44.9
Gohir.A04G098100 Gossypium hirsutum HOM05D003510 ORTHO05D004144 3.8e-14 81.6 71 57.7
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 3.8e-14 81.6 75 49.3
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 5.0e-14 81.3 98 43.9
Gohir.A04G098050 Gossypium hirsutum HOM05D003510 ORTHO05D004144 6.5e-14 80.9 71 52.1
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 8.5e-14 80.5 72 54.2
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 1.1e-13 80.1 69 52.2
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 1.9e-13 79.3 63 60.3
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 1.9e-13 79.3 69 52.2
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 2.5e-13 79.0 69 50.7
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.2e-13 78.6 70 51.4
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 5.5e-13 77.8 67 55.2
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 5.5e-13 77.8 69 52.2
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 5.5e-13 77.8 61 60.7
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 5.5e-13 77.8 77 51.9
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 7.2e-13 77.4 61 57.4
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 7.2e-13 77.4 61 55.7
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 9.5e-13 77.0 61 59.0
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 1.6e-12 76.3 59 61.0
AUR62023876 Chenopodium quinoa HOM05D000182 ORTHO05D000112 2.1e-12 75.9 53 73.6
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.7e-12 75.5 61 57.4
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 6.1e-12 74.3 60 56.7
Gohir.D04G137850 Gossypium hirsutum HOM05D003510 ORTHO05D004144 8.0e-12 73.9 71 50.7
SMO012G0036 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 8.0e-12 73.9 70 47.1
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.0e-11 73.6 70 47.1
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 1.4e-11 73.2 61 54.1
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.8e-11 72.8 61 54.1
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 2.3e-11 72.4 74 44.6
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 3.0e-11 72.0 61 55.7
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 5.2e-11 71.2 64 53.1
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 2.0e-10 69.3 70 51.4
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 3.4e-10 68.6 70 51.4
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.4e-10 68.6 72 51.4
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 4.4e-10 68.2 34 94.1
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 2.2e-09 65.9 65 47.7
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 2.8e-09 65.5 56 55.4
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 3.7e-09 65.1 60 48.3
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 4.9e-09 64.7 82 42.7
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 5.4e-08 61.2 46 63.0
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 9.2e-08 60.5 40 72.5
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 2.7e-07 58.9 34 73.5
AUR62034132 Chenopodium quinoa HOM05D003510 ORTHO05D000126 4.5e-07 58.2 32 81.2
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 1.3e-06 56.6 34 73.5
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 2.9e-06 55.5 66 37.9
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 8.6e-06 53.9 71 33.8


User provided reference genes

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