Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044551 Chenopodium quinoa HOM05D000322 ORTHO05D000186 6.6e-23 109.8 53 100.0
AUR62008721 Chenopodium quinoa HOM05D000322 ORTHO05D000186 4.0e-20 100.5 48 100.0
AUR62025514 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.9e-18 94.4 48 91.7
EL10Ac7g17581 Beta vulgaris HOM05D000322 ORTHO05D000186 5.4e-17 90.1 48 89.6
EL10Ac7g17584 Beta vulgaris HOM05D000322 ORTHO05D000186 6.7e-15 83.2 48 81.2
Ah.15g092960 Amaranthus hybridus HOM05D000322 ORTHO05D000186 3.3e-14 80.9 48 79.2
EL10Ac8g19476 Beta vulgaris HOM05D000322 ORTHO05D000186 3.3e-14 80.9 48 79.2
Ah.15g092950 Amaranthus hybridus HOM05D000322 ORTHO05D000186 3.7e-13 77.4 48 70.8
AUR62008723 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.4e-12 74.7 48 70.8
AUR62025513 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.4e-12 74.7 48 70.8
AUR62044552 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.4e-12 74.7 48 70.8
AUR62025512 Chenopodium quinoa HOM05D000322 ORTHO05D000186 9.0e-12 72.8 48 66.7
AUR62008724 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.0e-11 71.6 48 66.7
AUR62025509 Chenopodium quinoa HOM05D000322 ORTHO05D000186 2.6e-11 71.2 48 64.6
EL10Ac2g03410 Beta vulgaris HOM05D000322 ORTHO05D000186 7.6e-11 69.7 48 68.8
AUR62038360 Chenopodium quinoa HOM05D000322 ORTHO05D000186 9.9e-11 69.3 48 68.8
AUR62040969 Chenopodium quinoa HOM05D000322 ORTHO05D000186 1.7e-10 68.6 48 64.6
AUR62008726 Chenopodium quinoa HOM05D000322 ORTHO05D000186 3.8e-10 67.4 48 64.6
AUR62008727 Chenopodium quinoa HOM05D000322 ORTHO05D000186 3.8e-10 67.4 48 62.5
AUR62025510 Chenopodium quinoa HOM05D000322 ORTHO05D000186 6.4e-10 66.6 48 62.5
Eucgr.H04013 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.2e-08 62.4 48 58.3
PGR031G1637 Punica granatum HOM05D000322 ORTHO05D000186 1.2e-08 62.4 45 55.6
PGR031G2071 Punica granatum HOM05D000322 ORTHO05D000186 1.6e-08 62.0 45 55.6
Dinv33082 Davidia involucrata HOM05D000322 ORTHO05D000186 2.1e-08 61.6 48 60.4
Eucgr.I00897 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.1e-08 61.6 45 51.1
Eucgr.I00898 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.1e-08 61.6 45 51.1
Eucgr.I00900 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.1e-08 61.6 45 51.1
Eucgr.I00902 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.1e-08 61.6 45 51.1
PGR004G1749 Punica granatum HOM05D000322 ORTHO05D000186 2.1e-08 61.6 45 53.3
EL10Ac2g03406 Beta vulgaris HOM05D000322 ORTHO05D000186 2.7e-08 61.2 48 60.4
Eucgr.H04019 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.5e-08 60.8 48 56.2
PGR031G3450 Punica granatum HOM05D000322 ORTHO05D000186 3.5e-08 60.8 45 53.3
Hund18218 Selenicereus undatus HOM05D000322 ORTHO05D000186 3.5e-08 60.8 48 60.4
Sc05g0003460 Simmondsia chinensis HOM05D000322 ORTHO05D000186 3.5e-08 60.8 48 54.2
Sc05g0003470 Simmondsia chinensis HOM05D000322 ORTHO05D000186 3.5e-08 60.8 48 60.4
Ah.07g208310 Amaranthus hybridus HOM05D000322 ORTHO05D000186 4.6e-08 60.5 48 56.2
Eucgr.H03992 Eucalyptus grandis HOM05D000322 ORTHO05D000186 4.6e-08 60.5 48 54.2
Dinv29694 Davidia involucrata HOM05D000322 ORTHO05D000186 6.0e-08 60.1 45 53.3
Eucgr.H04000 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.0e-08 60.1 48 56.2
Eucgr.I00894 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.0e-08 60.1 48 52.1
PGR004G1984 Punica granatum HOM05D000322 ORTHO05D000186 6.0e-08 60.1 45 53.3
PGR004G2695 Punica granatum HOM05D000322 ORTHO05D000186 6.0e-08 60.1 45 51.1
EL10Ac3g05791 Beta vulgaris HOM05D000322 ORTHO05D000186 7.9e-08 59.7 51 54.9
Dinv29697 Davidia involucrata HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 51.1
Eucgr.H04001 Eucalyptus grandis HOM05D000322 ORTHO05D000186 7.9e-08 59.7 48 58.3
Eucgr.H04002 Eucalyptus grandis HOM05D000322 ORTHO05D000186 7.9e-08 59.7 48 58.3
Eucgr.H04007 Eucalyptus grandis HOM05D000322 ORTHO05D000186 7.9e-08 59.7 48 58.3
PGR004G0472 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 46.7
PGR004G0864 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 46.7
PGR004G1134 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 46.7
PGR004G1453 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 46.7
PGR004G1630 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 51.1
PGR031G3369 Punica granatum HOM05D000322 ORTHO05D000186 7.9e-08 59.7 48 56.2
TAR365G0876 Trochodendron aralioides HOM05D000322 ORTHO05D000186 7.9e-08 59.7 45 55.6
Dinv29693 Davidia involucrata HOM05D000322 ORTHO05D000186 1.0e-07 59.3 45 51.1
Eucgr.H03983 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.0e-07 59.3 48 54.2
Eucgr.H04016 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.0e-07 59.3 48 56.2
Eucgr.H04017 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.0e-07 59.3 48 56.2
PGR004G2165 Punica granatum HOM05D000322 ORTHO05D000186 1.0e-07 59.3 45 51.1
PGR031G1396 Punica granatum HOM05D000322 ORTHO05D000186 1.0e-07 59.3 45 51.1
CSS0022759 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.3e-07 58.9 48 54.2
Eucgr.H03986 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.3e-07 58.9 48 52.1
PGR004G0112 Punica granatum HOM05D000322 ORTHO05D000186 1.3e-07 58.9 45 51.1
Hund18224 Selenicereus undatus HOM05D000322 ORTHO05D000186 1.3e-07 58.9 48 60.4
Hund18229 Selenicereus undatus HOM05D000322 ORTHO05D000186 1.3e-07 58.9 48 60.4
CSS0024261 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.8e-07 58.5 48 50.0
CSS0036024 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.8e-07 58.5 48 50.0
CSS0039713 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.8e-07 58.5 48 54.2
Eucgr.H03989 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.8e-07 58.5 48 52.1
Eucgr.H03997 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.8e-07 58.5 48 52.1
TAR636G1643 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.8e-07 58.5 45 55.6
Eucgr.H03988 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.3e-07 58.2 48 52.1
PGR004G0413 Punica granatum HOM05D000322 ORTHO05D000186 2.3e-07 58.2 45 51.1
Ah.07g202780 Amaranthus hybridus HOM05D000322 ORTHO05D000186 3.0e-07 57.8 48 52.1
Ah.09g227870 Amaranthus hybridus HOM05D000322 ORTHO05D000186 3.0e-07 57.8 48 52.1
Ah.13g067380 Amaranthus hybridus HOM05D000322 ORTHO05D000186 3.0e-07 57.8 48 52.1
CSS0001622 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 3.0e-07 57.8 48 52.1
CSS0032777 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 3.0e-07 57.8 48 52.1
Eucgr.I00896 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.0e-07 57.8 45 51.1
PGR004G1044 Punica granatum HOM05D000322 ORTHO05D000186 3.0e-07 57.8 45 51.1
PGR004G1926 Punica granatum HOM05D000322 ORTHO05D000186 3.0e-07 57.8 45 51.1
PGR004G2736 Punica granatum HOM05D000322 ORTHO05D000186 3.0e-07 57.8 45 51.1
Eucgr.H04009 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.9e-07 57.4 48 56.2
PGR004G1519 Punica granatum HOM05D000322 ORTHO05D000186 3.9e-07 57.4 45 48.9
PGR004G2495 Punica granatum HOM05D000322 ORTHO05D000186 3.9e-07 57.4 45 48.9
Eucgr.H03987 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.1e-07 57.0 48 47.9
Eucgr.H03990 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.1e-07 57.0 45 46.7
Eucgr.H03993 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.1e-07 57.0 48 47.9
Eucgr.H04010 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.1e-07 57.0 48 54.2
PGR031G3782 Punica granatum HOM05D000322 ORTHO05D000186 5.1e-07 57.0 48 52.1
CiPaw.08G092700 Carya illinoinensis HOM05D000322 ORTHO05D000186 6.7e-07 56.6 48 52.1
Eucgr.H03994 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.7e-07 56.6 45 46.7
Eucgr.H04003 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.7e-07 56.6 48 50.0
Eucgr.H04018 Eucalyptus grandis HOM05D000322 ORTHO05D000186 6.7e-07 56.6 48 52.1
TAR636G2675 Trochodendron aralioides HOM05D000322 ORTHO05D000186 6.7e-07 56.6 45 53.3
AUR62016100 Chenopodium quinoa HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 52.1
PGR004G0172 Punica granatum HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 52.1
PGR004G1393 Punica granatum HOM05D000322 ORTHO05D000186 8.7e-07 56.2 45 51.1
PGR004G1624 Punica granatum HOM05D000322 ORTHO05D000186 8.7e-07 56.2 44 50.0
Hund18220 Selenicereus undatus HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 56.2
Hund18232 Selenicereus undatus HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 58.3
Sc05g0003450 Simmondsia chinensis HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 54.2
TAR365G1188 Trochodendron aralioides HOM05D000322 ORTHO05D000186 8.7e-07 56.2 48 52.1
CSS0049942 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 50.0
AUR62035048 Chenopodium quinoa HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 52.1
AUR62043456 Chenopodium quinoa HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 52.1
Dinv44328 Davidia involucrata HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 52.1
Eucgr.H03995 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.1e-06 55.8 45 46.7
Eucgr.H03998 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.1e-06 55.8 45 46.7
Eucgr.H04012 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 50.0
PGR004G0506 Punica granatum HOM05D000322 ORTHO05D000186 1.1e-06 55.8 45 46.7
QL12p027631 Quercus lobata HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 52.1
Hund18233 Selenicereus undatus HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 58.3
TAR365G1193 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.1e-06 55.8 48 52.1
vmacro08096 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 1.1e-06 55.8 45 48.9
Duzib212G0928 Durio zibethinus HOM05D000322 ORTHO05D000186 1.5e-06 55.5 48 52.1
Eucgr.H02708 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.5e-06 55.5 48 50.0
Lsat_1_v5_gn_6_113061 Lactuca sativa HOM05D000322 ORTHO05D000186 1.5e-06 55.5 48 52.1
Nn4g25701 Nelumbo nucifera HOM05D000322 ORTHO05D000186 1.5e-06 55.5 48 52.1
Rhsim04G0228500 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.9e-06 55.1 45 48.9
VMungo1309G0974 Vigna mungo HOM05D000322 ORTHO05D000186 1.9e-06 55.1 48 54.2
CiPaw.07G113000 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.5e-06 54.7 45 46.7
Haze_01131 Corylus avellana HOM05D000479 ORTHO05D000186 2.5e-06 54.7 48 52.1
Dinv10046 Davidia involucrata HOM05D000387 ORTHO05D000258 2.5e-06 54.7 34 64.7
Dinv29706 Davidia involucrata HOM05D000322 ORTHO05D000186 2.5e-06 54.7 46 50.0
Lsat_1_v5_gn_1_56120 Lactuca sativa HOM05D000322 ORTHO05D000186 2.5e-06 54.7 48 52.1
Medtr4g120760 Medicago truncatula HOM05D000322 ORTHO05D000186 2.5e-06 54.7 48 54.2
PGR031G0665 Punica granatum HOM05D000322 ORTHO05D000186 2.5e-06 54.7 45 48.9
PGR119G1560 Punica granatum HOM05D000322 ORTHO05D000186 2.5e-06 54.7 48 50.0
Ciclev10007165m.g Citrus clementina HOM05D000322 ORTHO05D000186 3.3e-06 54.3 48 52.1
Lj4g0003328 Lotus japonicus HOM05D000322 ORTHO05D000186 3.3e-06 54.3 48 52.1
Glyma.17G030000 Glycine max HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 52.1
Lsat_1_v5_gn_1_58140 Lactuca sativa HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 52.1
Nn4g25700 Nelumbo nucifera HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 45.8
Oeu011216.1 Olea europaea HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 54.2
Peaxi162Scf00073g01326 Petunia axillaris HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 52.1
Prupe.1G128800 Prunus persica HOM05D000322 ORTHO05D000186 4.3e-06 53.9 48 47.9
PGR004G1530 Punica granatum HOM05D000322 ORTHO05D000186 4.3e-06 53.9 45 44.4
Ah.07g208300 Amaranthus hybridus HOM05D000322 ORTHO05D000186 5.6e-06 53.5 43 48.8
Dinv29705 Davidia involucrata HOM05D000322 ORTHO05D000186 5.6e-06 53.5 45 46.7
Glyma.07G243900 Glycine max HOM05D000322 ORTHO05D000186 5.6e-06 53.5 48 50.0
Glyma.15G146100 Glycine max HOM05D000322 ORTHO05D000186 5.6e-06 53.5 48 52.1
Manes.15G008600 Manihot esculenta HOM05D000322 ORTHO05D000186 5.6e-06 53.5 48 50.0
Peaxi162Scf00575g00710 Petunia axillaris HOM05D000322 ORTHO05D000186 5.6e-06 53.5 45 46.7
CSS0032688 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 7.4e-06 53.1 45 46.7
Ca_21501_v3 Cicer arietinum L. HOM05D000322 ORTHO05D000186 7.4e-06 53.1 48 54.2
Eucgr.H03984 Eucalyptus grandis HOM05D000322 ORTHO05D000186 7.4e-06 53.1 45 44.4
Lj1C15T17 Lonicera japonica HOM05D000322 ORTHO05D000186 7.4e-06 53.1 45 48.9
Phvul.003G109000 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 7.4e-06 53.1 48 50.0
PGR004G0694 Punica granatum HOM05D000322 ORTHO05D000186 7.4e-06 53.1 45 46.7
PGR004G1867 Punica granatum HOM05D000322 ORTHO05D000186 7.4e-06 53.1 48 47.9
TPR.G21805 Trifolium pratense HOM05D000322 ORTHO05D000186 7.4e-06 53.1 48 52.1
GSVIVG01035054001 Vitis vinifera HOM05D000322 ORTHO05D000186 7.4e-06 53.1 48 54.2
Ah.13g067430 Amaranthus hybridus HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 47.9
CiPaw.02G078400 Carya illinoinensis HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 47.9
Eucgr.H03991 Eucalyptus grandis HOM05D000322 ORTHO05D000186 9.6e-06 52.8 46 43.5
Lj3A721T46 Lonicera japonica HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 50.0
Peaxi162Scf00073g00917 Petunia axillaris HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 50.0
Peaxi162Scf00073g01323 Petunia axillaris HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 50.0
Peaxi162Scf00073g01428 Petunia axillaris HOM05D000130 ORTHO05D009856 9.6e-06 52.8 48 50.0
Phvul.009G253000 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 52.1
Prupe.1G127200 Prunus persica HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 54.2
TAR362G0501 Trochodendron aralioides HOM05D000322 ORTHO05D000186 9.6e-06 52.8 45 46.7
VMungo1215G1370 Vigna mungo HOM05D000322 ORTHO05D000186 9.6e-06 52.8 48 47.9


User provided reference genes

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