Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044488 Chenopodium quinoa HOM05D004636 ORTHO05D005584 1.2e-129 466.5 228 100.0
AUR62017039 Chenopodium quinoa HOM05D004636 ORTHO05D005584 7.6e-108 394.0 242 82.2
Ah.14g089580 Amaranthus hybridus HOM05D004636 ORTHO05D005584 3.9e-96 355.1 214 77.1
EL10Ac8g20412 Beta vulgaris HOM05D004636 ORTHO05D005584 5.5e-82 308.1 272 59.2
Gohir.A03G093400 Gossypium hirsutum HOM05D004636 ORTHO05D005584 1.3e-80 303.5 268 57.8
Thecc.03G053600 Theobroma cacao HOM05D004636 ORTHO05D005584 1.3e-80 303.5 270 57.8
Gohir.D02G122500 Gossypium hirsutum HOM05D004636 ORTHO05D005584 1.5e-79 300.1 268 57.1
Duzib068G0268 Durio zibethinus HOM05D004636 ORTHO05D005584 2.5e-79 299.3 271 56.8
CSS0035576 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 3.3e-79 298.9 268 57.8
Haze_18812 Corylus avellana HOM05D004636 ORTHO05D005584 3.3e-79 298.9 271 56.5
GSVIVG01008416001 Vitis vinifera HOM05D004636 ORTHO05D005584 7.4e-79 297.7 264 58.0
FAN13G2936 Fragaria x ananassa HOM05D004636 ORTHO05D005584 9.7e-79 297.4 262 58.4
FAN08G1718 Fragaria x ananassa HOM05D004636 ORTHO05D005584 1.3e-78 297.0 262 58.4
CSS0010888 Camellia sinensis var. sinensis HOM05D004636 ORTHO05D005584 1.6e-78 296.6 263 59.3
QL10p028203 Quercus lobata HOM05D004636 ORTHO05D005584 2.2e-78 296.2 264 56.8
QL10p028318 Quercus lobata HOM05D004636 ORTHO05D005584 2.2e-78 296.2 264 56.8
Duzib205G0159 Durio zibethinus HOM05D004636 ORTHO05D005584 2.8e-78 295.8 271 56.5
Atru.chr9.1749 Acer truncatum HOM05D004636 ORTHO05D005584 3.7e-78 295.4 271 55.7
Nn4g24193 Nelumbo nucifera HOM05D004636 ORTHO05D005584 1.1e-77 293.9 263 55.1
MD06G1230700 Malus domestica HOM05D004636 ORTHO05D005584 1.4e-77 293.5 263 55.9
MD14G1235300 Malus domestica HOM05D004636 ORTHO05D005584 1.8e-77 293.1 263 55.1
Peaxi162Scf00207g00030 Petunia axillaris HOM05D004636 ORTHO05D005584 4.1e-77 292.0 253 59.3
TWI60G0943 Tripterygium wilfordii HOM05D004636 ORTHO05D005584 4.1e-77 292.0 263 58.6
Gorai.005G131600 Gossypium raimondii HOM05D004636 ORTHO05D005584 6.9e-77 291.2 263 56.7
CiPaw.15G140800 Carya illinoinensis HOM05D004636 ORTHO05D005584 9.0e-77 290.8 270 55.6
TAR371G0148 Trochodendron aralioides HOM05D004636 ORTHO05D005584 1.2e-76 290.4 263 55.9
RcHm_v2.0_Chr7g0178611 Rosa chinensis HOM05D004636 ORTHO05D005584 1.5e-76 290.0 267 56.9
CsaV3_1G007090 Cucumis sativus L. HOM05D004636 ORTHO05D005584 2.6e-76 289.3 260 57.7
DCAR_010202 Daucus carota HOM05D004636 ORTHO05D005584 2.6e-76 289.3 194 69.6
Manes.14G170300 Manihot esculenta HOM05D004636 ORTHO05D005584 2.6e-76 289.3 263 57.0
Ca_17202_v3 Cicer arietinum L. HOM05D004636 ORTHO05D005584 3.4e-76 288.9 263 56.3
ECA246G4140 Erigeron canadensis HOM05D004636 ORTHO05D005584 3.4e-76 288.9 262 56.9
Potri.015G039900 Populus trichocarpa HOM05D004636 ORTHO05D005584 3.4e-76 288.9 263 56.3
Cc04_g06400 Coffea canephora HOM05D004636 ORTHO05D005584 4.5e-76 288.5 266 54.5
Nitab4.5_0003221g0040 Nicotiana tabacum HOM05D004636 ORTHO05D005584 4.5e-76 288.5 262 56.9
Sc04g0004880 Simmondsia chinensis HOM05D004636 ORTHO05D005584 4.5e-76 288.5 263 54.4
Nitab4.5_0007852g0030 Nicotiana tabacum HOM05D004636 ORTHO05D005584 5.9e-76 288.1 262 56.9
Ciclev10009007m.g Citrus clementina HOM05D004636 ORTHO05D005584 7.7e-76 287.7 264 55.3
Prupe.5G232000 Prunus persica HOM05D004636 ORTHO05D005584 7.7e-76 287.7 262 55.0
SalBow1G0702 Salvia bowleyana HOM05D004636 ORTHO05D005584 1.3e-75 287.0 262 56.1
Sed0027092 Sechium edule HOM05D004636 ORTHO05D005584 1.3e-75 287.0 262 56.1
Actinidia39845 Actinidia chinensis HOM05D004636 ORTHO05D005584 1.7e-75 286.6 268 54.9
PGR083G1819 Punica granatum HOM05D004636 ORTHO05D005584 1.7e-75 286.6 263 56.3
vmacro18131 Vaccinium macrocarpon HOM05D004636 ORTHO05D005584 1.7e-75 286.6 292 52.7
Cpa.g.sc3.409 Carica papaya HOM05D004636 ORTHO05D005584 2.2e-75 286.2 263 56.7
unitig_0.g807 Utricularia gibba HOM05D004636 ORTHO05D005584 2.2e-75 286.2 265 54.7
Nitab4.5_0001456g0100 Nicotiana tabacum HOM05D004636 ORTHO05D005584 2.9e-75 285.8 263 56.3
Lsat_1_v5_gn_3_28120 Lactuca sativa HOM05D004636 ORTHO05D005584 3.8e-75 285.4 262 57.6
MELO3C002127.2 Cucumis melo HOM05D004636 ORTHO05D005584 6.5e-75 284.6 260 56.5
Migut.D01560 Erythranthe guttata HOM05D004636 ORTHO05D005584 1.4e-74 283.5 264 55.3
Sabra15G0057200 Salix brachista HOM05D004636 ORTHO05D005584 2.5e-74 282.7 196 67.3
PSO017G6915 Papaver somniferum HOM05D004636 ORTHO05D005584 3.2e-74 282.3 263 54.0
Nitab4.5_0006894g0020 Nicotiana tabacum HOM05D004636 ORTHO05D005584 4.2e-74 282.0 263 55.5
Peaxi162Scf00683g00341 Petunia axillaris HOM05D004636 ORTHO05D005584 4.2e-74 282.0 262 55.7
HanXRQChr17g0539331 Helianthus annuus HOM05D004636 ORTHO05D005584 5.5e-74 281.6 262 56.5
PSO478G0328 Papaver somniferum HOM05D004636 ORTHO05D005584 5.5e-74 281.6 263 54.4
ClCG04G010690 Citrullus lanatus HOM05D004636 ORTHO05D005584 7.2e-74 281.2 260 56.2
Lalb_Chr16g0387091 Lupinus albus HOM05D004636 ORTHO05D005584 9.4e-74 280.8 263 55.5
Phvul.002G329000 Phaseolus vulgaris HOM05D004636 ORTHO05D005584 9.4e-74 280.8 263 54.4
CAN.G1129.48 Capsicum annuum HOM05D004636 ORTHO05D005584 2.1e-73 279.6 262 55.7
Rhsim08G0076500 Rhododendron simsii HOM05D004636 ORTHO05D005584 2.1e-73 279.6 293 51.9
Glyma.08G053000 Glycine max HOM05D004636 ORTHO05D005584 3.6e-73 278.9 263 53.6
Medtr8g107030 Medicago truncatula HOM05D004636 ORTHO05D005584 4.6e-73 278.5 263 51.7
Sopen03g037780 Solanum pennellii HOM05D004636 ORTHO05D005584 4.6e-73 278.5 262 55.3
Solyc03g118830.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 6.1e-73 278.1 263 54.0
Lj4g0026502 Lotus japonicus HOM05D004636 ORTHO05D005584 7.9e-73 277.7 262 55.7
PGSC0003DMG401005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 1.8e-72 276.6 262 55.7
Aqoxy5G00264 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 2.3e-72 276.2 262 54.2
Psat7g002040 Pisum sativum HOM05D004636 ORTHO05D005584 2.3e-72 276.2 263 52.1
Sopen06g026260 Solanum pennellii HOM05D004636 ORTHO05D005584 2.3e-72 276.2 261 55.6
TPR.G1423 Trifolium pratense HOM05D004636 ORTHO05D005584 2.3e-72 276.2 263 52.1
CAN.G423.25 Capsicum annuum HOM05D004636 ORTHO05D005584 6.7e-72 274.6 261 55.2
Os03g0708400 Oryza sativa ssp. japonica HOM05D004636 ORTHO05D005584 8.8e-72 274.2 262 55.3
Solyc06g068970.3 Solanum lycopersicum HOM05D004636 ORTHO05D005584 8.8e-72 274.2 261 55.2
PGSC0003DMG402028784 Solanum tuberosum HOM05D004636 ORTHO05D005584 2.5e-71 272.7 261 55.2
Oeu046173.1 Olea europaea HOM05D004636 ORTHO05D005584 3.3e-71 272.3 180 70.0
Oeu046174.1 Olea europaea HOM05D004636 ORTHO05D005584 3.3e-71 272.3 180 70.0
SGA_v2.0_scaffold191G40443 Striga asiatica HOM05D004636 ORTHO05D005584 3.3e-71 272.3 192 66.7
Lj5C156T13 Lonicera japonica HOM05D004636 ORTHO05D005584 4.3e-71 271.9 243 58.8
Aqoxy3G00107 Aquilegia oxysepala HOM05D004636 ORTHO05D005584 7.4e-71 271.2 263 52.5
AT1G73650 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 7.4e-71 271.2 272 54.8
Lj5C156T2 Lonicera japonica HOM05D004636 ORTHO05D005584 9.7e-71 270.8 195 66.7
Lalb_Chr05g0221771 Lupinus albus HOM05D004636 ORTHO05D005584 9.7e-71 270.8 264 53.4
Zm00001eb216550 Zea mays HOM05D004636 ORTHO05D005584 4.8e-70 268.5 257 52.5
ATR1102G012 Amborella trichopoda HOM05D004636 ORTHO05D005584 2.4e-69 266.2 262 51.9
AL2G33430 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 4.1e-69 265.4 277 53.4
Carub.0002s2039 Capsella rubella HOM05D004636 ORTHO05D005584 4.1e-69 265.4 271 54.2
arahy.Tifrunner.gnm1.ann1.N5TGRV Arachis hypogaea HOM05D004636 ORTHO05D005584 6.9e-69 264.6 210 60.0
THA.LOC104813922 Tarenaya hassleriana HOM05D004636 ORTHO05D005584 6.9e-69 264.6 196 65.3
CARHR018750 Cardamine hirsuta HOM05D004636 ORTHO05D005584 1.2e-68 263.8 263 54.0
arahy.Tifrunner.gnm1.ann1.1QZS5S Arachis hypogaea HOM05D004636 ORTHO05D005584 1.5e-68 263.5 222 57.7
CARHR066710 Cardamine hirsuta HOM05D004636 ORTHO05D005584 2.6e-68 262.7 271 53.1
Gohir.A11G003700 Gossypium hirsutum HOM05D004636 ORTHO05D005584 4.5e-68 261.9 192 63.0
Gohir.D11G003200 Gossypium hirsutum HOM05D004636 ORTHO05D005584 5.9e-68 261.5 192 63.0
AT1G18180 Arabidopsis thaliana HOM05D004636 ORTHO05D005584 2.2e-67 259.6 263 52.1
Aa31LG7G2890 Aethionema arabicum HOM05D004636 ORTHO05D005584 2.9e-67 259.2 263 51.0
BcaB05g24805 Brassica carinata HOM05D004636 ORTHO05D005584 2.9e-67 259.2 178 69.1
Gorai.007G004200 Gossypium raimondii HOM05D004636 ORTHO05D005584 5.0e-67 258.5 192 62.5
BraA07t31501Z Brassica rapa HOM05D004636 ORTHO05D005584 8.5e-67 257.7 178 68.0
Sp1g16160 Schrenkiella parvula HOM05D004636 ORTHO05D005584 8.5e-67 257.7 263 51.7
AL1G30550 Arabidopsis lyrata HOM05D004636 ORTHO05D005584 1.1e-66 257.3 255 53.3
Thhalv10018948m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 1.4e-66 256.9 178 67.4
Thhalv10008683m.g Eutrema salsugineum HOM05D004636 ORTHO05D005584 2.5e-66 256.1 195 64.1
Carub.0001s1782 Capsella rubella HOM05D004636 ORTHO05D005584 3.2e-66 255.8 272 50.0
BcaC08g46785 Brassica carinata HOM05D004636 ORTHO05D005584 4.2e-66 255.4 178 67.4
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 4.2e-66 255.4 276 51.1
BcaC03g15444 Brassica carinata HOM05D002296 ORTHO05D005584 1.6e-65 253.4 179 67.6
BolC2t09166H Brassica oleracea HOM05D004636 ORTHO05D005584 1.6e-65 253.4 179 67.6
BraA02t06927Z Brassica rapa HOM05D004636 ORTHO05D005584 1.6e-65 253.4 179 67.0
C02p31240 Brassica napus HOM05D004636 ORTHO05D005584 2.7e-65 252.7 179 67.0
HPP92_004161 Vanilla planifolia HOM05D004636 ORTHO05D005584 2.7e-65 252.7 270 48.9
A02p18820 Brassica napus HOM05D004636 ORTHO05D005584 3.6e-65 252.3 178 66.9
Sp5g28820 Schrenkiella parvula HOM05D004636 ORTHO05D005584 4.7e-65 251.9 178 66.9
Aa31LG4G3950 Aethionema arabicum HOM05D004636 ORTHO05D005584 1.0e-64 250.8 262 53.1
BolC6t39815H Brassica oleracea HOM05D004636 ORTHO05D005584 1.8e-64 250.0 178 66.9
C05p16490 Brassica napus HOM05D004636 ORTHO05D005584 2.3e-64 249.6 279 49.8
A06p14210 Brassica napus HOM05D004636 ORTHO05D005584 3.0e-64 249.2 279 49.8
BraA06t24552Z Brassica rapa HOM05D004636 ORTHO05D005584 6.7e-64 248.1 262 51.1
BcaC05g25713 Brassica carinata HOM05D004636 ORTHO05D005584 8.8e-64 247.7 279 49.5
BolC5t30346H Brassica oleracea HOM05D004636 ORTHO05D005584 8.8e-64 247.7 279 49.5
BcaB03g15070 Brassica carinata HOM05D004636 ORTHO05D005584 8.2e-62 241.1 179 66.5
Mapoly0098s0041 Marchantia polymorpha HOM05D004636 ORTHO05D005584 8.2e-62 241.1 276 46.7
Mapoly0088s0079 Marchantia polymorpha HOM05D004636 ORTHO05D005584 1.1e-61 240.7 180 61.7
Pp3c13_4300 Physcomitrium patens HOM05D004636 ORTHO05D005584 2.4e-61 239.6 175 61.1
SEGI_28538 Sequoiadendron giganteum HOM05D004636 ORTHO05D005584 4.1e-61 238.8 178 61.2
unitig_60.g25784 Utricularia gibba HOM05D004636 ORTHO05D005584 5.3e-61 238.4 244 52.9
CDE06G1767 Ceratophyllum demersum HOM05D004636 ORTHO05D005584 1.3e-59 233.8 238 52.1
Manes.06G007800 Manihot esculenta HOM05D004636 ORTHO05D005584 1.9e-58 229.9 234 54.3
CBR_g19480 Chara braunii HOM05D004636 ORTHO05D005584 2.3e-56 223.0 172 57.0
Haze_18816 Corylus avellana HOM05D004636 ORTHO05D005584 1.5e-55 220.3 170 61.8
Glyma.05G245000 Glycine max HOM05D004636 ORTHO05D005584 2.6e-55 219.5 226 52.7
AagrBONN_evm.TU.Sc2ySwM_368.3263 Anthoceros agrestis HOM05D004636 ORTHO05D005584 4.4e-55 218.8 260 42.3
Pp3c14_25340 Physcomitrium patens HOM05D004636 ORTHO05D005584 9.7e-55 217.6 177 57.6
Pp3c10_10850 Physcomitrium patens HOM05D004636 ORTHO05D005584 3.7e-54 215.7 190 54.2
Sed0020868 Sechium edule HOM05D004636 ORTHO05D005584 9.1e-53 211.1 142 69.7
ATR1102G014 Amborella trichopoda HOM05D004636 ORTHO05D005584 1.7e-51 206.8 147 65.3
Mapoly0024s0109 Marchantia polymorpha HOM05D004636 ORTHO05D005584 5.7e-47 191.8 180 47.2
A07p39520 Brassica napus HOM05D004636 ORTHO05D005584 3.5e-44 182.6 122 70.5
COL.COLO4_16136 Corchorus olitorius HOM05D004636 ORTHO05D005584 4.5e-44 182.2 190 51.6
Haze_18815 Corylus avellana HOM05D004636 ORTHO05D005584 1.3e-43 180.6 206 47.1
Haze_18821 Corylus avellana HOM05D004636 ORTHO05D005584 1.9e-42 176.8 148 57.4
Dinv18254 Davidia involucrata HOM05D004636 ORTHO05D005584 5.7e-39 165.2 164 52.4
Hund23775 Selenicereus undatus HOM05D004636 ORTHO05D005584 1.5e-34 150.6 79 82.3
PGSC0003DMG402005669 Solanum tuberosum HOM05D004636 ORTHO05D005584 1.5e-34 150.6 163 48.5
HPP92_011083 Vanilla planifolia HOM05D004636 ORTHO05D005584 8.0e-33 144.8 114 59.6
Lsat_1_v5_gn_4_113781 Lactuca sativa HOM05D004636 ORTHO05D005584 1.4e-32 144.1 170 47.6
Cfa022515 Carpinus fangiana HOM05D004636 ORTHO05D005584 6.6e-27 125.2 190 40.5
Nn2g11442 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.8e-24 115.2 138 44.2
MCO11G174 Micromonas commoda HOM05D004636 ORTHO05D005584 8.9e-24 114.8 149 36.9
CBR_g30737 Chara braunii HOM05D004636 ORTHO05D005584 1.2e-23 114.4 129 42.6
Cre09.g401701 Chlamydomonas reinhardtii HOM05D004636 ORTHO05D005584 9.8e-23 111.3 150 37.3
PRCOL_00001152 Prasinoderma coloniale HOM05D004636 ORTHO05D005584 1.9e-18 97.1 166 36.7
HanXRQChr10g0301511 Helianthus annuus HOM05D004636 ORTHO05D005584 9.8e-15 84.7 168 33.3
Cfa026861 Carpinus fangiana HOM05D004636 ORTHO05D005584 3.5e-12 76.3 176 30.1
AUR62014842 Chenopodium quinoa HOM05D004636 ORTHO05D005584 4.7e-09 65.9 48 70.8
MBI04_g26123_MAGBIO Magnolia biondii HOM05D004720 ORTHO05D005359 4.0e-08 62.8 152 33.6
Oeu040512.1 Olea europaea HOM05D004720 ORTHO05D005359 5.2e-08 62.4 167 28.7
MCO02G479 Micromonas commoda HOM05D004636 ORTHO05D049179 1.5e-07 60.8 121 31.4
HanXRQChr15g0480161 Helianthus annuus HOM05D004720 ORTHO05D005359 5.8e-07 58.9 152 32.9
CSS0029348 Camellia sinensis var. sinensis HOM05D004720 ORTHO05D005359 1.3e-06 57.8 152 28.3
ECA236G2191 Erigeron canadensis HOM05D004720 ORTHO05D005359 1.7e-06 57.4 152 32.2
Lsat_1_v5_gn_7_30260 Lactuca sativa HOM05D004720 ORTHO05D005359 2.9e-06 56.6 152 31.6
CiPaw.01G087200 Carya illinoinensis HOM05D004720 ORTHO05D005359 4.9e-06 55.8 152 28.3
DCAR_010453 Daucus carota HOM05D004720 ORTHO05D005359 4.9e-06 55.8 152 28.3
Eucgr.I02738 Eucalyptus grandis HOM05D004720 ORTHO05D005359 4.9e-06 55.8 156 28.8
HanXRQChr04g0118361 Helianthus annuus HOM05D004720 ORTHO05D005359 4.9e-06 55.8 206 29.1
Cre07.g325450 Chlamydomonas reinhardtii HOM05D004720 ORTHO05D005359 6.4e-06 55.5 154 29.2
HPP92_007371 Vanilla planifolia HOM05D004720 ORTHO05D005359 6.4e-06 55.5 152 27.6
CBR_g3145 Chara braunii HOM05D004720 ORTHO05D005359 8.4e-06 55.1 167 29.3
Medtr7g117475 Medicago truncatula HOM05D004720 ORTHO05D005359 8.4e-06 55.1 152 28.3
Oeu055483.1 Olea europaea HOM05D004720 ORTHO05D005359 8.4e-06 55.1 162 26.5


User provided reference genes

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