Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 0.0e+00 1919.8 1099 100.0
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 0.0e+00 1614.0 1298 77.1
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 0.0e+00 1427.2 1299 71.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 6.2e-139 499.6 1356 34.2
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.7e-136 491.5 657 52.4
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 5.1e-109 400.2 1514 30.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 9.6e-108 396.0 1357 33.9
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.5e-89 334.0 1523 29.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.3e-66 257.3 1547 26.2
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.2e-62 246.1 1249 27.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 4.5e-57 227.6 1426 25.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 6.1e-54 217.2 1276 26.6
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.7e-52 210.7 1576 23.9
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.3e-51 207.2 1342 25.6
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-48 198.7 1577 23.8
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.4e-44 184.9 1456 24.3
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.2e-41 176.4 1497 24.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 8.9e-37 160.2 1352 24.1
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 4.9e-35 154.5 1358 23.1
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.0e-33 147.5 1271 24.0
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.1e-31 143.3 1498 24.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 2.5e-31 142.1 1617 22.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.1e-29 136.7 1418 23.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.3e-29 135.6 1312 22.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.4e-28 131.3 1454 22.9
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.3e-27 129.8 1196 22.7
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 2.9e-27 128.6 741 26.6
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.9e-27 128.6 279 36.2
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.9e-27 128.6 1490 23.8
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 3.7e-27 128.3 299 34.1
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 5.4e-26 124.4 1256 24.0
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.2e-25 123.2 261 35.6
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.3e-23 114.8 456 30.5
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.2e-22 113.2 1429 23.0
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.1e-22 112.5 239 41.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 6.2e-22 110.9 451 29.9
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.8e-21 109.4 1445 22.8
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 2.3e-21 109.0 446 31.8
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 3.1e-21 108.6 415 29.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 5.2e-21 107.8 312 33.0
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.8e-21 107.5 1312 22.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 6.8e-21 107.5 415 30.1
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.2e-20 106.7 665 25.0
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.5e-20 106.3 1466 22.2
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.0e-20 105.9 305 31.5
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 2.0e-20 105.9 520 29.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.6e-20 105.5 406 29.1
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.6e-20 105.5 321 31.2
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.6e-20 105.5 390 29.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 4.4e-20 104.8 253 34.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.9e-20 103.6 423 28.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-19 103.2 226 40.3
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.2e-19 102.4 423 28.8
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 2.9e-19 102.1 101 56.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 8.4e-19 100.5 432 28.9
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.1e-18 100.1 1370 21.8
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.4e-18 99.0 241 36.9
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.2e-18 98.6 252 36.1
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.2e-18 98.6 252 36.1
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.1e-18 98.2 441 29.3
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 7.1e-18 97.4 119 45.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.2e-17 96.7 235 38.7
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.1e-17 95.9 263 31.2
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.6e-17 94.7 329 31.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 4.6e-17 94.7 235 35.7
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.0e-17 94.4 230 39.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.0e-17 94.4 230 39.1
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.0e-17 94.4 1052 24.9
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.0e-16 93.6 246 34.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.0e-16 93.6 253 34.0
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.0e-16 93.6 230 38.7
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.3e-16 92.4 1598 22.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.6e-16 90.5 243 37.0
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 8.6e-16 90.5 789 24.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-15 90.1 228 37.7
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-15 89.7 229 38.0
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.3e-15 88.6 92 52.2
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 3.3e-15 88.6 506 25.3
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 3.3e-15 88.6 339 28.3
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.3e-15 88.6 324 27.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 4.3e-15 88.2 287 53.3
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 5.6e-15 87.8 100 48.0
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.6e-15 87.8 97 50.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 5.6e-15 87.8 97 50.5
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 7.3e-15 87.4 474 25.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 9.6e-15 87.0 98 49.0
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.2e-14 86.7 98 49.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.2e-14 86.7 98 49.0
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 2.1e-14 85.9 506 25.3
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.8e-14 85.5 235 34.5
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 3.6e-14 85.1 92 50.0
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.6e-14 85.1 362 29.8
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 3.6e-14 85.1 71 73.2
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 4.7e-14 84.7 93 51.6
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.7e-14 84.7 219 36.1
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 8.1e-14 84.0 247 27.1
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.4e-13 83.2 104 43.3
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 2.4e-13 82.4 92 48.9
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.4e-13 82.4 258 31.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 4.4e-12 78.2 256 29.7
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 5.8e-12 77.8 260 31.2
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.9e-12 77.0 67 58.2
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.3e-11 76.6 758 22.2
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-11 76.3 226 35.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 2.9e-11 75.5 334 28.7
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.9e-11 75.5 77 49.4
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 3.8e-11 75.1 305 27.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.8e-11 75.1 251 31.1
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 4.9e-11 74.7 318 29.9
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 8.4e-11 73.9 334 28.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 8.4e-11 73.9 329 28.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 8.4e-11 73.9 201 36.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.1e-10 73.6 249 29.3
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.9e-10 72.8 209 32.5
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.6e-09 69.7 255 27.1
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 4.6e-09 68.2 133 46.6
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 7.8e-09 67.4 58 55.2
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.9e-08 65.1 276 24.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 6.6e-08 64.3 301 28.6
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 6.6e-08 64.3 78 44.9
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 6.6e-08 64.3 308 26.3
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-07 63.2 340 26.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 3.3e-07 62.0 505 23.4
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 4.3e-07 61.6 58 51.7
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 5.6e-07 61.2 57 54.4
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.1e-06 59.3 57 56.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.6e-06 58.5 251 30.3


User provided reference genes

Program Settings