Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62044106 Chenopodium quinoa HOM05D005123 ORTHO05D006532 3.2e-141 505.0 242 100.0
AUR62004896 Chenopodium quinoa HOM05D005123 ORTHO05D006532 6.8e-107 391.0 276 73.6
AUR62001056 Chenopodium quinoa HOM05D005123 ORTHO05D006532 6.4e-105 384.4 276 72.1
EL10Ac4g09082 Beta vulgaris HOM05D005123 ORTHO05D006532 1.3e-94 350.1 281 64.1
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 3.6e-92 342.0 275 65.1
Hund06950 Selenicereus undatus HOM05D005123 ORTHO05D006532 3.6e-84 315.5 270 61.9
Cfa006396 Carpinus fangiana HOM05D005123 ORTHO05D006532 4.4e-82 308.5 277 58.5
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 2.2e-81 306.2 286 55.6
Duzib177G0775 Durio zibethinus HOM05D005123 ORTHO05D006532 3.8e-81 305.4 275 58.9
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 6.4e-81 304.7 280 57.1
Thecc.05G280500 Theobroma cacao HOM05D005123 ORTHO05D006532 8.4e-81 304.3 275 58.9
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 1.1e-80 303.9 283 56.2
COL.COLO4_15380 Corchorus olitorius HOM05D005123 ORTHO05D006532 1.9e-80 303.1 277 57.0
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 1.9e-80 303.1 274 57.3
Lsat_1_v5_gn_0_36021 Lactuca sativa HOM05D005123 ORTHO05D006532 1.9e-80 303.1 286 55.9
Sc06g0003780 Simmondsia chinensis HOM05D005123 ORTHO05D006532 1.9e-80 303.1 272 58.1
ECA232G3987 Erigeron canadensis HOM05D005123 ORTHO05D006532 3.5e-79 298.9 288 53.5
HanXRQChr09g0259781 Helianthus annuus HOM05D005123 ORTHO05D006532 4.6e-79 298.5 274 55.8
Phvul.006G102800 Phaseolus vulgaris HOM05D005123 ORTHO05D006532 4.6e-79 298.5 274 57.3
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 6.0e-79 298.1 277 55.2
CsaV3_2G003960 Cucumis sativus L. HOM05D005123 ORTHO05D006532 1.0e-78 297.4 276 56.2
DCAR_006646 Daucus carota HOM05D005123 ORTHO05D006532 1.0e-78 297.4 290 56.9
Glyma.19G245900 Glycine max HOM05D005123 ORTHO05D006532 1.3e-78 297.0 274 56.9
Gohir.A08G216000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.7e-78 296.6 270 57.4
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 3.0e-78 295.8 275 57.5
VMungo0540G0367 Vigna mungo HOM05D005123 ORTHO05D006532 3.0e-78 295.8 274 56.6
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 3.9e-78 295.4 277 56.3
Gohir.D08G232600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 6.6e-78 294.7 270 57.0
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 1.1e-77 293.9 276 56.5
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 1.5e-77 293.5 277 56.3
Gorai.004G247100 Gossypium raimondii HOM05D005123 ORTHO05D006532 1.5e-77 293.5 270 57.0
Psat0s169g0040 Pisum sativum HOM05D005123 ORTHO05D006532 3.3e-77 292.4 278 55.8
QL03p027727 Quercus lobata HOM05D005123 ORTHO05D006532 3.3e-77 292.4 298 54.0
arahy.Tifrunner.gnm1.ann1.9VED02 Arachis hypogaea HOM05D005123 ORTHO05D006532 4.3e-77 292.0 280 55.4
Sed0022916 Sechium edule HOM05D005123 ORTHO05D006532 5.6e-77 291.6 273 56.0
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 7.3e-77 291.2 274 55.5
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 9.6e-77 290.8 280 55.0
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 9.6e-77 290.8 287 55.1
unitig_0.g2303 Utricularia gibba HOM05D005123 ORTHO05D006532 1.3e-76 290.4 278 54.3
Aqoxy5G00319 Aquilegia oxysepala HOM05D005123 ORTHO05D006532 1.6e-76 290.0 277 55.6
Nn1g02615 Nelumbo nucifera HOM05D005123 ORTHO05D006532 1.6e-76 290.0 273 55.3
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 2.1e-76 289.7 277 54.2
Cpa.g.sc736.2 Carica papaya HOM05D005123 ORTHO05D006532 2.8e-76 289.3 274 55.5
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 2.8e-76 289.3 277 54.5
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 3.6e-76 288.9 277 54.9
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 4.8e-76 288.5 282 53.2
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 6.2e-76 288.1 282 52.8
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 8.1e-76 287.7 283 54.8
FvH4_4g17540 Fragaria vesca HOM05D005123 ORTHO05D006532 8.1e-76 287.7 277 54.5
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 8.1e-76 287.7 277 54.2
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 1.1e-75 287.3 285 53.7
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 1.1e-75 287.3 276 55.4
Manes.08G136400 Manihot esculenta HOM05D005123 ORTHO05D006532 1.1e-75 287.3 274 54.7
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 1.4e-75 287.0 279 53.8
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 1.8e-75 286.6 281 54.8
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 2.4e-75 286.2 273 55.3
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 4.0e-75 285.4 276 54.0
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 5.3e-75 285.0 277 54.2
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 5.3e-75 285.0 282 52.8
vmacro13816 Vaccinium macrocarpon HOM05D005123 ORTHO05D006532 5.3e-75 285.0 269 56.1
Aa31LG5G15060 Aethionema arabicum HOM05D005123 ORTHO05D006532 9.0e-75 284.3 275 53.1
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 9.0e-75 284.3 277 53.8
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 9.0e-75 284.3 276 55.4
MSTRG.5089 Avicennia marina HOM05D005123 ORTHO05D006532 1.2e-74 283.9 288 54.2
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 4.5e-74 282.0 281 53.0
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 5.8e-74 281.6 275 55.3
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 7.6e-74 281.2 280 52.9
Sp3g03490 Schrenkiella parvula HOM05D005123 ORTHO05D006532 1.3e-73 280.4 269 54.6
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 1.7e-73 280.0 274 54.0
TWI12G0989 Tripterygium wilfordii HOM05D005123 ORTHO05D006532 8.4e-73 277.7 271 54.6
SalBow4G1942 Salvia bowleyana HOM05D005123 ORTHO05D006532 1.1e-72 277.3 287 53.3
BcaB04g19310 Brassica carinata HOM05D005123 ORTHO05D006532 1.4e-72 276.9 269 54.3
BcaC01g04358 Brassica carinata HOM05D005123 ORTHO05D006532 1.4e-72 276.9 269 53.9
C03p41060 Brassica napus HOM05D005123 ORTHO05D006532 1.4e-72 276.9 269 53.9
BolC3t16395H Brassica oleracea HOM05D005123 ORTHO05D006532 1.4e-72 276.9 269 53.9
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 1.9e-72 276.6 277 52.0
Carub.0003s0381 Capsella rubella HOM05D005123 ORTHO05D006532 4.2e-72 275.4 268 53.4
CARHR078850 Cardamine hirsuta HOM05D005123 ORTHO05D006532 4.2e-72 275.4 269 53.2
Zm00001eb030960 Zea mays HOM05D005123 ORTHO05D006532 4.2e-72 275.4 277 50.9
AT3G04650 Arabidopsis thaliana HOM05D005123 ORTHO05D006532 5.4e-72 275.0 270 53.0
Thhalv10020605m.g Eutrema salsugineum HOM05D005123 ORTHO05D006532 7.1e-72 274.6 268 53.0
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 9.3e-72 274.2 284 53.2
AL3G14690 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 1.2e-71 273.9 269 53.2
A03p33760 Brassica napus HOM05D005123 ORTHO05D006532 1.6e-71 273.5 269 53.5
BraA03t12549Z Brassica rapa HOM05D005123 ORTHO05D006532 1.6e-71 273.5 269 53.5
Rhsim07G0074600 Rhododendron simsii HOM05D005123 ORTHO05D006532 1.6e-71 273.5 274 54.4
Oeu038460.1 Olea europaea HOM05D005123 ORTHO05D006532 1.3e-70 270.4 287 51.9
Nitab4.5_0010168g0020 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.1e-69 267.3 318 48.1
Gohir.D08G233000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.9e-69 266.5 269 52.8
HPP92_026486 Vanilla planifolia HOM05D005123 ORTHO05D006532 3.3e-69 265.8 284 50.0
HPP92_014225 Vanilla planifolia HOM05D005123 ORTHO05D006532 1.8e-67 260.0 284 49.3
CSS0014237 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 7.6e-66 254.6 279 49.8
CSS0032730 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 7.6e-66 254.6 279 49.8
Pp3c3_15330 Physcomitrium patens HOM05D005123 ORTHO05D006532 3.0e-62 242.7 271 47.6
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 9.6e-61 237.7 269 48.3
Haze_04379 Corylus avellana HOM05D005123 ORTHO05D006532 2.0e-58 229.9 232 52.6
Gorai.004G247500 Gossypium raimondii HOM05D005123 ORTHO05D006532 2.6e-58 229.6 268 48.1
SMO367G1262 Selaginella moellendorffii HOM05D005123 ORTHO05D006532 7.6e-58 228.0 270 45.9
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 5.0e-57 225.3 272 45.6
MBI11_g20622_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 5.1e-54 215.3 234 51.7
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 1.1e-53 214.2 228 52.2
MELO3C004395.2 Cucumis melo HOM05D005123 ORTHO05D006532 7.7e-50 201.4 227 48.9
Lj9C664G10 Lonicera japonica HOM05D005123 ORTHO05D006532 3.8e-49 199.1 285 42.5
Nitab4.5_0002247g0060 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.8e-46 190.3 242 46.3
Cc02_g30900 Coffea canephora HOM05D005123 ORTHO05D006532 6.7e-46 188.3 238 46.6
Gohir.D02G179700 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.5e-45 187.2 111 79.3
CiPaw.08G122000 Carya illinoinensis HOM05D005123 ORTHO05D006532 3.3e-45 186.0 112 80.4
ClCG02G016790 Citrullus lanatus HOM05D005123 ORTHO05D006532 1.5e-42 177.2 226 44.7
SalBow4G0099 Salvia bowleyana HOM05D005123 ORTHO05D006532 2.0e-42 176.8 113 75.2
CBR_g26324 Chara braunii HOM05D005123 ORTHO05D006532 1.4e-40 170.6 320 35.0
Cre03.g207150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D006532 2.1e-39 166.8 285 34.7
CiPaw.08G122100 Carya illinoinensis HOM05D005123 ORTHO05D006532 1.2e-34 151.0 84 79.8
Ciclev10029649m.g Citrus clementina HOM05D005123 ORTHO05D006532 9.4e-32 141.4 85 71.8
Ciclev10029972m.g Citrus clementina HOM05D005123 ORTHO05D006532 1.2e-26 124.4 106 56.6
Glyma.03G247900 Glycine max HOM05D005123 ORTHO05D006532 2.1e-23 113.6 78 62.8
Gohir.D11G185600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 3.4e-21 106.3 54 87.0
C05p55240 Brassica napus HOM05D005123 ORTHO05D006532 5.7e-21 105.5 108 52.8
Gohir.A13G075900 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.7e-20 104.0 53 86.8
Gohir.D01G029000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.7e-20 104.0 53 86.8
Gohir.D08G124750 Gossypium hirsutum HOM05D005123 ORTHO05D006532 1.7e-20 104.0 53 86.8
Nitab4.5_0004275g0030 Nicotiana tabacum HOM05D006218 ORTHO05D007338 2.8e-20 103.2 76 59.2
BolC3t16228H Brassica oleracea HOM05D005123 ORTHO05D002627 6.3e-20 102.1 108 50.9
Ciclev10029835m.g Citrus clementina HOM05D005123 ORTHO05D006532 5.4e-19 99.0 68 63.2
Cc02_g30910 Coffea canephora HOM05D005123 ORTHO05D006532 3.5e-18 96.3 54 77.8
PRCOL_00004966 Prasinoderma coloniale HOM05D005123 ORTHO05D006532 4.5e-18 95.9 241 31.5
MCO15G267 Micromonas commoda HOM05D005123 ORTHO05D006532 7.7e-18 95.1 274 29.2
Atru.chr2.852 Acer truncatum HOM05D005123 ORTHO05D006532 3.8e-17 92.8 55 69.1
Atru.chr2.845 Acer truncatum HOM05D005123 ORTHO05D006532 8.5e-17 91.7 53 71.7
Nitab4.5_0003027g0090 Nicotiana tabacum HOM05D005123 ORTHO05D006532 2.1e-15 87.0 76 52.6


User provided reference genes

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