Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.8e-34 147.9 67 100.0
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.2e-22 107.5 63 69.8
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.4e-22 107.1 78 65.4
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 5.4e-22 107.1 77 66.2
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.4e-22 107.1 62 75.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-21 105.9 77 64.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.1e-21 105.1 76 65.8
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 3.5e-21 104.4 62 74.2
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.5e-21 104.4 76 61.8
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.6e-21 104.0 77 64.9
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 6.0e-21 103.6 77 63.6
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 6.0e-21 103.6 78 61.5
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 7.9e-21 103.2 76 61.8
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 7.9e-21 103.2 78 61.5
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.3e-20 102.4 77 63.6
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.3e-20 101.7 77 62.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 2.3e-20 101.7 77 62.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 2.3e-20 101.7 77 61.0
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.3e-20 101.7 78 61.5
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.9e-20 100.9 77 62.3
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 3.9e-20 100.9 77 61.0
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.9e-20 100.9 77 62.3
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 5.1e-20 100.5 78 59.0
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 5.1e-20 100.5 76 61.8
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 5.1e-20 100.5 77 61.0
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 6.7e-20 100.1 75 62.7
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.1e-19 99.4 78 56.4
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 1.9e-19 98.6 77 62.3
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 1.9e-19 98.6 77 62.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.5e-19 98.2 77 59.7
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.5e-19 98.2 77 59.7
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 3.3e-19 97.8 74 60.8
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 3.3e-19 97.8 75 56.0
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.3e-19 97.4 77 58.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 4.3e-19 97.4 77 58.4
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 4.3e-19 97.4 76 63.2
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 4.3e-19 97.4 77 59.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 5.6e-19 97.1 77 58.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 5.6e-19 97.1 78 59.0
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.6e-19 97.1 78 59.0
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.6e-19 97.1 78 61.5
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 5.6e-19 97.1 76 60.5
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 7.4e-19 96.7 77 61.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 7.4e-19 96.7 76 59.2
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.4e-19 96.7 77 59.7
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.4e-19 96.7 77 59.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 9.6e-19 96.3 77 61.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.3e-18 95.9 82 57.3
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.3e-18 95.9 77 61.0
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.6e-18 95.5 105 48.6
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.6e-18 95.5 78 57.7
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.6e-18 95.5 76 61.8
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.1e-18 95.1 78 59.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 2.1e-18 95.1 78 59.0
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 2.1e-18 95.1 77 61.0
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 2.1e-18 95.1 78 60.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.8e-18 94.7 72 63.9
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 2.8e-18 94.7 77 61.0
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.8e-18 94.7 79 60.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.6e-18 94.4 76 56.6
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 3.6e-18 94.4 71 60.6
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.6e-18 94.4 77 58.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 4.8e-18 94.0 77 61.0
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 6.2e-18 93.6 79 59.5
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 6.2e-18 93.6 75 58.7
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 6.2e-18 93.6 77 57.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 8.1e-18 93.2 76 56.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 8.1e-18 93.2 77 59.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 8.1e-18 93.2 77 57.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.1e-17 92.8 77 58.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 4.0e-17 90.9 76 59.2
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.0e-17 90.9 76 53.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 4.0e-17 90.9 76 56.6
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 5.3e-17 90.5 77 58.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 5.3e-17 90.5 77 54.5
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 5.3e-17 90.5 75 57.3
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 6.9e-17 90.1 77 55.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 9.0e-17 89.7 77 55.8
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 9.0e-17 89.7 78 57.7
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 1.2e-16 89.4 76 56.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.2e-16 89.4 77 55.8
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.2e-16 89.4 77 55.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.2e-16 89.4 78 53.8
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 2.0e-16 88.6 76 55.3
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.4e-16 87.8 76 53.9
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 4.5e-16 87.4 76 55.3
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 4.5e-16 87.4 76 53.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 7.6e-16 86.7 76 56.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 7.6e-16 86.7 76 53.9
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 7.6e-16 86.7 78 55.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 9.9e-16 86.3 77 54.5
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 9.9e-16 86.3 78 55.1
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.7e-15 85.5 77 57.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.7e-15 85.5 77 57.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.7e-15 85.5 77 57.1
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.2e-15 85.1 77 57.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 3.8e-15 84.3 77 55.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 3.8e-15 84.3 77 54.5
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 4.9e-15 84.0 77 55.8
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 4.9e-15 84.0 77 55.8
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 6.4e-15 83.6 77 53.2
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.4e-15 83.6 71 59.2
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.1e-14 82.8 77 53.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 1.1e-14 82.8 78 50.0
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.1e-14 82.8 77 49.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.4e-14 82.4 77 55.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.2e-13 79.3 76 48.7
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 2.7e-13 78.2 78 48.7
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.6e-13 77.4 78 50.0
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.0e-12 76.3 77 49.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.3e-12 75.9 40 82.5
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 3.0e-12 74.7 39 84.6
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 9.6e-11 69.7 76 44.7
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.3e-10 69.3 38 78.9
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 4.8e-10 67.4 38 73.7
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 8.2e-10 66.6 78 46.2
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.4e-09 65.9 78 41.0
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 3.4e-08 61.2 33 75.8
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 3.4e-08 61.2 33 75.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.9e-07 58.2 28 89.3


User provided reference genes

Program Settings