Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043206 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.3e-85 318.9 166 100.0
AUR62043207 Chenopodium quinoa HOM05D003075 ORTHO05D003430 6.3e-19 98.2 161 46.6
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 3.2e-15 85.9 179 40.8
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 4.6e-14 82.0 61 70.5
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.3e-13 79.7 61 67.2
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 3.7e-11 72.4 62 62.9
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 4.8e-11 72.0 61 63.9
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 8.2e-11 71.2 68 57.4
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 8.2e-11 71.2 62 59.7
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 1.1e-10 70.9 61 62.3
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 1.4e-10 70.5 62 59.7
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.4e-10 70.5 65 56.9
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 1.4e-10 70.5 61 62.3
Glyma.17G254800 Glycine max HOM05D003075 ORTHO05D003430 1.8e-10 70.1 65 56.9
EL10Ac1g00881 Beta vulgaris HOM05D003075 ORTHO05D003430 2.4e-10 69.7 62 62.9
Thhalv10001570m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 2.4e-10 69.7 62 59.7
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 2.4e-10 69.7 61 62.3
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 3.1e-10 69.3 61 60.7
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 3.1e-10 69.3 61 60.7
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 3.1e-10 69.3 61 62.3
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 4.1e-10 68.9 61 55.7
AL4G44430 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 4.1e-10 68.9 62 59.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.1e-10 68.9 58 63.8
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 4.1e-10 68.9 60 61.7
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 4.1e-10 68.9 61 59.0
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 4.1e-10 68.9 61 59.0
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 5.3e-10 68.6 61 59.0
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 5.3e-10 68.6 61 63.9
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 5.3e-10 68.6 61 60.7
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 5.3e-10 68.6 62 58.1
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 5.3e-10 68.6 61 59.0
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 9.1e-10 67.8 61 59.0
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 9.1e-10 67.8 61 59.0
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 9.1e-10 67.8 61 59.0
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 9.1e-10 67.8 62 58.1
BraA05t19503Z Brassica rapa HOM05D003566 ORTHO05D005288 9.1e-10 67.8 62 58.1
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 9.1e-10 67.8 61 57.4
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 9.1e-10 67.8 61 59.0
Ah.05g174300 Amaranthus hybridus HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
AT5G23600 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
BcaC02g12230 Brassica carinata HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
C04p06190 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
C04p06230 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
BolC4t22244H Brassica oleracea HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
BraA05t19501Z Brassica rapa HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
CARHR140540 Cardamine hirsuta HOM05D003075 ORTHO05D003430 1.2e-09 67.4 62 58.1
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 1.2e-09 67.4 61 59.0
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 1.2e-09 67.4 61 60.7
Nitab4.5_0005272g0010 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.2e-09 67.4 61 57.4
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 1.2e-09 67.4 61 59.0
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 1.2e-09 67.4 61 57.4
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 1.5e-09 67.0 61 60.7
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 1.5e-09 67.0 61 59.0
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 1.5e-09 67.0 61 60.7
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 1.5e-09 67.0 59 61.0
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 1.5e-09 67.0 69 55.1
Aqoxy7G00659 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 2.0e-09 66.6 61 62.3
BraA05t19496Z Brassica rapa HOM05D003075 ORTHO05D003430 2.0e-09 66.6 62 56.5
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 2.0e-09 66.6 61 59.0
Sp4g27360 Schrenkiella parvula HOM05D003075 ORTHO05D003430 2.6e-09 66.2 62 56.5
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 2.6e-09 66.2 58 60.3
Carub.0004s2796 Capsella rubella HOM05D003075 ORTHO05D003430 3.4e-09 65.9 62 56.5
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.4e-09 65.9 58 63.8
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.4e-09 65.9 58 63.8
A05p05260 Brassica napus HOM05D003075 ORTHO05D003430 4.5e-09 65.5 62 54.8
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 4.5e-09 65.5 61 57.4
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 4.5e-09 65.5 61 57.4
Ca_19898_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 5.9e-09 65.1 59 62.7
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 5.9e-09 65.1 59 62.7
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 5.9e-09 65.1 68 52.9
PSO384G4045 Papaver somniferum HOM05D003075 ORTHO05D003430 5.9e-09 65.1 62 56.5
BcaC02g12227 Brassica carinata HOM05D003075 ORTHO05D003430 7.7e-09 64.7 62 59.7
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 7.7e-09 64.7 61 59.0
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 7.7e-09 64.7 61 57.4
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 7.7e-09 64.7 61 59.0
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 7.7e-09 64.7 62 54.8
A05p05290 Brassica napus HOM05D003075 ORTHO05D003430 1.0e-08 64.3 62 56.5
BraA05t19498Z Brassica rapa HOM05D003075 ORTHO05D003430 1.0e-08 64.3 62 56.5
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 1.0e-08 64.3 62 58.1
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.0e-08 64.3 61 60.7
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 1.3e-08 63.9 61 54.1
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 1.7e-08 63.5 61 55.7
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 1.7e-08 63.5 59 59.3
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.7e-08 63.5 61 57.4
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 2.2e-08 63.2 62 59.7
arahy.Tifrunner.gnm1.ann1.LQNG80 Arachis hypogaea HOM05D003075 ORTHO05D003430 2.2e-08 63.2 61 54.1
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 2.2e-08 63.2 59 57.6
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 2.2e-08 63.2 62 56.5
BcaB02g08941 Brassica carinata HOM05D003075 ORTHO05D003430 2.9e-08 62.8 62 53.2
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 2.9e-08 62.8 68 54.4
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 2.9e-08 62.8 58 56.9
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 2.9e-08 62.8 58 63.8
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 2.9e-08 62.8 59 59.3
arahy.Tifrunner.gnm1.ann1.2E18SB Arachis hypogaea HOM05D003075 ORTHO05D003430 5.0e-08 62.0 61 54.1
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 5.0e-08 62.0 61 55.7
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 6.5e-08 61.6 58 56.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 6.5e-08 61.6 61 52.5
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 8.5e-08 61.2 58 56.9
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 8.5e-08 61.2 58 56.9
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 8.5e-08 61.2 58 56.9
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 8.5e-08 61.2 58 56.9
Gohir.D08G140725 Gossypium hirsutum HOM05D003075 ORTHO05D003430 8.5e-08 61.2 61 57.4
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 8.5e-08 61.2 58 56.9
TAR375G0194 Trochodendron aralioides HOM05D003075 ORTHO05D003430 8.5e-08 61.2 59 57.6
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 1.1e-07 60.8 62 58.1
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 1.1e-07 60.8 61 57.4
Gorai.012G088100 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.1e-07 60.8 61 55.7
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 1.1e-07 60.8 61 57.4
Gohir.A07G188680 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.4e-07 60.5 62 56.5
Gohir.D10G086848 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.4e-07 60.5 62 56.5
Gohir.D12G206056 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.4e-07 60.5 62 56.5
Aa31LG1G26840 Aethionema arabicum HOM05D003075 ORTHO05D003430 1.9e-07 60.1 62 54.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.9e-07 60.1 58 60.3
Gohir.A01G125075 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.9e-07 60.1 62 54.8
Gohir.A05G324955 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.9e-07 60.1 62 54.8
Gohir.D02G170625 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.9e-07 60.1 62 54.8
Gorai.003G063700 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.9e-07 60.1 62 54.8
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 2.5e-07 59.7 61 55.7
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 2.5e-07 59.7 60 56.7
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 2.5e-07 59.7 59 57.6
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.2e-07 58.9 58 55.2
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 4.2e-07 58.9 58 55.2
Gohir.A05G240901 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.5e-07 58.5 60 56.7
Gohir.A11G286400 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.5e-07 58.5 60 56.7
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.2e-07 58.2 58 55.2
Gohir.A02G078703 Gossypium hirsutum HOM05D003075 ORTHO05D003430 7.2e-07 58.2 62 53.2
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 7.2e-07 58.2 61 55.7
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.2e-07 58.2 61 55.7
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 7.2e-07 58.2 58 56.9
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 7.2e-07 58.2 58 55.2
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 7.2e-07 58.2 62 54.8
Zm00001eb244410 Zea mays HOM05D003075 ORTHO05D003430 9.4e-07 57.8 61 54.1
CDE09G0478 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 1.2e-06 57.4 61 50.8
Gohir.D03G073728 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.2e-06 57.4 61 55.7
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.2e-06 57.4 61 54.1
Gorai.009G455600 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.2e-06 57.4 61 54.1
Gorai.010G043000 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.2e-06 57.4 59 55.9
Gorai.007G184200 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.6e-06 57.0 61 54.1
Gohir.D03G091900 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.1e-06 56.6 59 55.9
Gohir.D12G196750 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.1e-06 56.6 59 55.9
SEGI_11423 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 2.1e-06 56.6 62 51.6
Gohir.D02G000100 Gossypium hirsutum HOM05D003075 ORTHO05D003430 2.7e-06 56.2 62 53.2
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 2.7e-06 56.2 61 52.5
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 2.7e-06 56.2 62 53.2
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 3.6e-06 55.8 62 53.2
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 3.6e-06 55.8 62 53.2
arahy.Tifrunner.gnm1.ann1.GDF4RG Arachis hypogaea HOM05D003075 ORTHO05D003430 4.7e-06 55.5 39 69.2
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 4.7e-06 55.5 61 50.8
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 6.1e-06 55.1 62 46.8
Gohir.D05G060998 Gossypium hirsutum HOM05D003075 ORTHO05D003430 6.1e-06 55.1 61 50.8
Gohir.D10G134300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 6.1e-06 55.1 59 54.2
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 7.9e-06 54.7 61 50.8


User provided reference genes

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