Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 5.3e-190 667.5 337 100.0
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 4.3e-168 594.7 337 89.6
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 9.1e-150 533.9 369 75.3
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 2.0e-149 532.7 360 76.4
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 6.1e-138 494.6 338 74.3
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 9.7e-136 487.3 331 75.2
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 7.7e-125 451.1 337 68.2
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.0e-124 450.7 341 67.4
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.3e-124 450.3 340 68.8
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 8.5e-124 447.6 335 68.1
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 8.0e-122 441.0 341 68.3
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 8.0e-122 441.0 336 67.3
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 8.0e-122 441.0 343 67.9
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 9.8e-120 434.1 336 64.6
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 2.8e-119 432.6 335 65.1
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.8e-118 429.9 344 65.4
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 3.1e-118 429.1 345 63.2
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.2e-117 427.2 337 65.0
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 4.5e-117 425.2 337 65.0
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 7.7e-117 424.5 338 65.1
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 1.7e-116 423.3 343 65.9
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 1.7e-116 423.3 335 64.5
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 3.8e-116 422.2 341 66.0
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 5.0e-116 421.8 336 64.6
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.1e-115 420.6 333 64.3
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.5e-115 420.2 333 64.0
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 2.5e-115 419.5 335 65.4
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 2.5e-115 419.5 340 64.4
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 4.2e-115 418.7 335 65.4
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 7.2e-115 417.9 343 64.4
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 1.6e-114 416.8 341 63.3
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 4.7e-114 415.2 338 63.0
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.8e-113 413.3 339 63.4
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 5.2e-113 411.8 334 65.3
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 6.8e-113 411.4 332 63.3
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 2.0e-112 409.8 331 65.9
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.6e-112 409.5 340 63.2
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 3.4e-112 409.1 332 62.3
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 3.4e-112 409.1 340 63.2
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 5.7e-112 408.3 312 65.7
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 9.8e-112 407.5 334 62.6
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 9.8e-112 407.5 341 63.9
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.7e-111 406.8 342 63.2
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 3.7e-111 405.6 327 64.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 6.4e-111 404.8 324 65.7
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.1e-110 404.1 339 62.5
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.1e-110 404.1 339 62.5
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 7.0e-110 401.4 341 63.3
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.2e-109 400.6 340 63.8
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 2.0e-109 399.8 339 61.9
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 2.0e-109 399.8 339 61.1
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 4.6e-109 398.7 310 65.8
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 5.9e-109 398.3 384 57.3
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.3e-108 397.1 352 61.6
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 3.9e-108 395.6 344 60.2
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 3.9e-108 395.6 339 62.5
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 8.6e-108 394.4 341 62.2
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 8.6e-108 394.4 338 61.8
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 8.6e-108 394.4 338 61.8
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 1.9e-107 393.3 276 71.4
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 3.3e-107 392.5 267 72.3
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 7.3e-107 391.3 332 64.2
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 9.5e-107 391.0 333 64.0
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 2.8e-106 389.4 332 63.9
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.8e-106 389.4 333 63.4
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 6.2e-106 388.3 338 62.7
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 2.3e-105 386.3 336 62.5
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 2.3e-105 386.3 340 59.4
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 3.1e-105 386.0 267 72.7
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 3.1e-105 386.0 315 64.4
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 5.2e-105 385.2 341 62.2
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.4e-104 382.5 343 61.8
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 4.4e-104 382.1 335 63.9
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 4.4e-104 382.1 370 58.1
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 5.8e-104 381.7 334 63.8
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.7e-103 380.2 271 72.3
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 1.7e-103 380.2 334 63.5
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.1e-102 377.5 377 55.7
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 2.4e-102 376.3 336 59.5
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 5.4e-102 375.2 348 60.6
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 4.6e-101 372.1 277 67.9
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 6.0e-101 371.7 340 59.4
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 5.2e-97 358.6 273 66.3
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 5.2e-97 358.6 310 58.1
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 2.2e-95 353.2 343 57.7
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 8.3e-95 351.3 267 66.3
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 8.3e-95 351.3 288 63.2
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.6e-93 347.1 313 60.4
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 1.3e-92 344.0 289 62.3
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 7.3e-91 338.2 290 64.1
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 3.6e-90 335.9 274 65.0
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 5.8e-88 328.6 275 65.1
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 1.2e-85 320.9 275 63.6
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 3.5e-85 319.3 251 63.3
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 8.1e-82 308.1 258 59.7
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 3.1e-81 306.2 342 50.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.2e-80 304.3 288 62.2
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 2.6e-80 303.1 270 58.9
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.3e-76 290.8 262 58.0
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 1.7e-76 290.4 252 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 3.4e-72 276.2 264 53.8
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 8.4e-71 271.6 222 67.6
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 5.8e-64 248.8 286 50.0
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 4.9e-63 245.7 255 50.2
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 3.5e-61 239.6 225 58.7
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 6.0e-61 238.8 225 58.7
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.5e-59 234.2 220 62.7
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 2.5e-59 233.4 194 64.9
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 9.6e-59 231.5 216 55.1
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 7.6e-56 221.9 158 69.6
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.6e-45 186.0 235 44.3
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.0e-44 184.9 153 62.1
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 2.6e-40 170.2 291 38.5
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.3e-39 167.9 262 38.5
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 9.4e-38 161.8 206 50.5
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 5.7e-19 99.4 64 75.0
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 1.1e-17 95.1 157 36.3
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 7.7e-16 89.0 69 60.9
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 3.1e-09 67.0 56 62.5
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 6.5e-07 59.3 37 70.3


User provided reference genes

Program Settings