Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 0.0e+00 1113.6 610 100.0
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 8.1e-165 584.7 673 57.9
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 9.3e-161 571.2 702 54.7
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 2.3e-127 460.3 679 49.2
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 9.7e-126 454.9 707 44.7
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 4.8e-125 452.6 377 73.7
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 1.4e-124 451.1 726 44.4
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 3.8e-122 443.0 661 47.4
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 5.0e-122 442.6 702 44.7
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 2.5e-121 440.3 724 45.9
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 3.2e-121 439.9 727 45.1
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 4.2e-121 439.5 691 44.6
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 7.2e-121 438.7 712 46.1
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 9.4e-121 438.3 691 44.6
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 2.1e-120 437.2 717 44.6
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 2.1e-120 437.2 698 45.6
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 6.1e-120 435.6 705 45.2
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.0e-119 434.9 703 44.4
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 5.1e-119 432.6 705 44.5
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 7.4e-118 428.7 699 43.9
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 1.3e-117 427.9 695 44.5
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 2.8e-117 426.8 654 45.6
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 6.3e-117 425.6 691 44.3
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.4e-116 424.5 698 43.6
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.8e-116 424.1 698 43.7
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 9.1e-116 421.8 706 44.2
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.2e-115 421.4 689 44.0
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 1.2e-115 421.4 704 43.5
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.5e-115 421.0 694 43.8
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 2.0e-115 420.6 708 44.6
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 3.5e-115 419.9 705 43.3
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.5e-115 419.5 710 44.4
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.9e-115 419.1 693 42.9
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 5.9e-115 419.1 694 43.7
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.7e-114 417.5 706 43.8
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 3.8e-114 416.4 718 44.2
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 8.5e-114 415.2 701 44.1
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.9e-113 414.1 706 43.6
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 4.2e-113 412.9 679 44.3
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 9.4e-113 411.8 693 43.7
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 1.2e-112 411.4 698 44.1
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 4.7e-112 409.5 678 44.1
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 2.3e-111 407.1 713 43.6
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 4.0e-111 406.4 771 41.0
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 8.8e-111 405.2 699 42.9
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 1.1e-110 404.8 703 43.2
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 1.5e-110 404.4 707 43.8
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 3.3e-110 403.3 683 44.5
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 1.3e-109 401.4 635 45.7
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 4.8e-109 399.4 669 44.2
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.1e-108 398.3 705 43.1
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 1.4e-108 397.9 676 43.3
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 1.2e-107 394.8 679 43.9
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.5e-107 393.3 699 42.6
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 4.5e-107 392.9 736 41.0
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 5.0e-106 389.4 672 43.9
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 2.5e-105 387.1 696 41.8
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 9.4e-105 385.2 700 43.6
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 1.2e-104 384.8 674 43.3
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 1.6e-104 384.4 709 42.0
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 2.1e-104 384.0 705 42.6
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 6.1e-104 382.5 705 41.7
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 2.3e-103 380.6 702 41.6
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 3.0e-103 380.2 708 41.5
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.2e-102 378.3 728 40.2
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 5.7e-102 375.9 707 40.5
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 9.8e-102 375.2 686 41.5
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 2.8e-101 373.6 674 42.6
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 3.7e-101 373.2 704 41.5
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 4.8e-101 372.9 677 40.9
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 4.8e-101 372.9 684 40.8
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 6.3e-101 372.5 687 41.3
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 8.3e-101 372.1 669 42.3
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.8e-100 370.9 674 42.1
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 1.8e-100 370.9 675 41.9
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 7.0e-100 369.0 666 42.5
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 9.1e-100 368.6 694 40.5
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 1.2e-99 368.2 681 41.0
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.2e-99 368.2 692 41.0
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 5.9e-99 365.9 667 40.2
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 5.9e-99 365.9 701 41.8
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 1.7e-98 364.4 706 40.5
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 3.8e-98 363.2 675 40.0
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.9e-97 360.9 723 40.0
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 1.6e-96 357.8 724 39.9
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 1.6e-96 357.8 649 41.8
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 3.6e-96 356.7 383 55.6
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 8.0e-96 355.5 674 39.9
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 8.0e-96 355.5 356 58.4
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 1.2e-94 351.7 701 41.2
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 1.2e-91 341.7 710 38.0
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 7.7e-91 339.0 665 41.4
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 2.3e-90 337.4 629 40.7
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 7.5e-86 322.4 351 53.3
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 3.7e-85 320.1 653 39.4
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 6.4e-85 319.3 862 36.0
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.1e-81 308.5 296 58.8
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 3.4e-78 297.0 568 41.9
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 5.8e-78 296.2 352 51.7
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 3.7e-77 293.5 559 41.5
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 3.5e-75 287.0 355 50.1
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 1.9e-73 281.2 653 37.4
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 2.1e-72 277.7 576 40.6
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 1.2e-62 245.4 212 63.2
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 4.4e-62 243.4 307 46.6
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 3.2e-60 237.3 304 47.7
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 2.7e-59 234.2 300 47.3
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 8.6e-58 229.2 470 41.7
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 1.9e-57 228.0 298 48.0
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 2.4e-55 221.1 251 51.4
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 2.4e-44 184.5 284 44.7
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.1e-43 181.4 170 57.6
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.7e-42 178.3 170 57.1
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 9.0e-39 166.0 516 35.1
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 8.4e-37 159.5 359 35.4
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 1.1e-36 159.1 223 44.8
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 3.9e-34 150.6 372 34.1
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 5.1e-34 150.2 357 33.9
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 2.1e-32 144.8 442 35.3
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 8.1e-32 142.9 213 42.7
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 4.5e-30 137.1 194 45.4
Actinidia04720 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.7e-29 135.2 325 39.7
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 4.6e-27 127.1 300 36.0
EL10Ac1g01716 Beta vulgaris HOM05D004897 ORTHO05D005928 1.2e-22 112.5 204 41.7
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 1.7e-21 108.6 146 45.2
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 8.5e-21 106.3 356 33.7
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 4.3e-17 94.0 129 42.6
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 5.7e-17 93.6 101 58.4
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 1.3e-16 92.4 128 42.2
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 1.3e-16 92.4 128 42.2
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 1.3e-16 92.4 128 42.2
Peaxi162Scf00683g00456 Petunia axillaris HOM05D004897 ORTHO05D005928 5.3e-15 87.0 128 44.5
BolC8t49477H Brassica oleracea HOM05D004897 ORTHO05D005928 1.0e-13 82.8 182 39.0
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 1.0e-13 82.8 119 40.3
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 2.2e-13 81.6 492 26.4
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.9e-12 78.6 75 52.0
BcaC05g25715 Brassica carinata HOM05D004897 ORTHO05D005928 3.2e-12 77.8 173 37.0
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 5.5e-12 77.0 403 25.3
PGSC0003DMG403005669 Solanum tuberosum HOM05D004897 ORTHO05D005928 2.3e-10 71.6 62 61.3
Prupe.7G033500 Prunus persica HOM05D004897 ORTHO05D005928 5.1e-10 70.5 78 55.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.1e-07 60.8 367 24.5
TWI36G1671 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 6.9e-07 60.1 55 65.5
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 9.1e-07 59.7 127 39.4
Prupe.5G050900 Prunus persica HOM05D004897 ORTHO05D005928 1.2e-06 59.3 49 65.3
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.6e-06 58.2 377 24.7
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 3.4e-06 57.8 80 48.8
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 3.4e-06 57.8 384 24.2
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.4e-06 57.8 384 24.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.4e-06 57.8 342 23.4
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 4.5e-06 57.4 363 24.5
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.5e-06 57.4 369 23.6
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.5e-06 57.4 385 23.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 4.5e-06 57.4 421 23.5
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 5.9e-06 57.0 384 24.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 5.9e-06 57.0 399 21.8


User provided reference genes

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