Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.4e-209 732.6 365 100.0
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.8e-196 689.1 363 92.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.1e-193 679.9 363 91.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.7e-176 622.1 363 85.1
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 5.2e-175 617.8 365 82.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.2e-173 612.5 365 80.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 8.3e-173 610.5 365 80.8
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.8e-172 609.4 362 80.9
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 9.1e-172 607.1 366 80.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.7e-171 605.5 347 83.9
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 4.5e-171 604.7 346 82.7
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 5.9e-171 604.4 358 80.7
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.2e-170 602.4 362 79.6
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.2e-170 602.4 365 80.5
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 8.5e-170 600.5 345 82.0
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.5e-169 599.7 365 79.2
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 9.4e-169 597.0 360 80.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.2e-168 596.7 362 79.3
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.1e-168 595.9 362 79.3
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 2.7e-168 595.5 347 81.3
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.7e-168 595.5 361 79.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.0e-167 593.6 346 81.5
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.4e-167 593.2 363 79.6
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.4e-167 593.2 573 59.5
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.4e-167 593.2 370 79.5
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-167 593.2 354 79.9
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 2.3e-167 592.4 347 82.1
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.0e-167 591.7 347 81.3
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.2e-166 590.1 364 79.4
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.2e-166 590.1 366 78.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.5e-166 589.7 366 79.0
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.0e-166 589.3 347 81.0
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 5.7e-166 587.8 366 78.4
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.7e-165 586.3 376 76.9
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.7e-165 586.3 356 81.2
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.8e-165 585.5 362 79.6
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 4.8e-165 584.7 388 74.5
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 6.3e-165 584.3 373 75.9
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.1e-164 583.6 346 80.1
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.4e-164 583.2 354 78.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.8e-164 582.8 350 79.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.8e-164 582.8 350 79.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.8e-164 582.8 347 79.5
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 4.1e-164 581.6 360 78.9
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 4.1e-164 581.6 361 79.2
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.1e-164 581.6 365 77.3
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.1e-164 581.6 347 80.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 9.1e-164 580.5 348 80.5
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.2e-163 580.1 354 77.7
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 2.0e-163 579.3 362 77.3
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 2.7e-163 578.9 365 76.2
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 4.5e-163 578.2 350 79.4
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 7.7e-163 577.4 350 79.1
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 7.7e-163 577.4 351 80.1
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 1.3e-162 576.6 347 79.8
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.3e-162 576.6 357 76.8
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 2.3e-162 575.9 363 78.0
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.3e-162 575.9 351 80.1
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.3e-162 575.9 351 80.1
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-162 575.1 366 76.5
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 3.8e-162 575.1 350 79.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 6.6e-162 574.3 380 75.0
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 6.6e-162 574.3 347 79.3
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.1e-161 573.5 361 77.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.9e-161 572.8 343 80.8
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 2.5e-161 572.4 351 78.6
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.3e-161 572.0 347 79.8
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 4.2e-161 571.6 347 79.5
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 5.5e-161 571.2 347 78.1
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 7.2e-161 570.9 347 78.1
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.6e-160 569.7 355 76.3
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.6e-160 569.7 363 75.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.8e-160 568.9 347 78.4
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.7e-160 568.2 367 76.6
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 6.1e-160 567.8 347 78.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 3.0e-159 565.5 327 83.5
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.0e-159 565.1 347 78.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.0e-159 565.1 349 77.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 5.2e-159 564.7 399 71.9
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 5.2e-159 564.7 314 86.9
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 6.8e-159 564.3 355 75.5
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 6.8e-159 564.3 351 78.3
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 8.9e-159 563.9 347 77.5
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.0e-158 562.8 366 74.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.4e-158 561.6 351 77.8
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 5.7e-158 561.2 347 76.7
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-157 560.1 351 77.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.7e-157 559.7 347 76.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.8e-157 558.9 347 76.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 4.9e-157 558.1 347 76.7
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.4e-156 555.8 345 79.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 9.2e-156 553.9 364 75.3
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 9.2e-156 553.9 365 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.2e-155 553.5 363 74.9
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.6e-155 553.1 364 74.2
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-154 549.7 375 72.3
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.7e-154 549.7 365 74.5
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.1e-153 547.0 367 73.3
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.9e-153 546.2 429 67.6
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 5.6e-153 544.7 334 78.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 8.0e-152 540.8 359 74.7
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 8.0e-152 540.8 351 76.6
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.2e-150 537.0 346 75.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.8e-150 534.6 345 76.5
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.3e-149 533.5 363 72.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.2e-149 532.7 348 74.7
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.3e-146 522.7 389 68.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.5e-145 520.0 365 71.0
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.5e-145 519.2 314 79.6
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.4e-142 508.4 347 71.5
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 2.2e-141 506.1 365 69.0
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.7e-139 499.2 347 71.5
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.3e-138 496.9 347 71.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.2e-136 490.3 347 70.9
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.9e-133 479.2 292 79.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.6e-128 463.4 366 62.8
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 6.4e-125 451.4 350 64.0
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 2.4e-116 422.9 293 72.0
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.5e-110 403.7 355 60.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.0e-77 292.4 194 75.8
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.2e-69 266.9 147 84.4
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.3e-66 256.9 374 43.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 7.2e-60 235.3 163 66.9
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 5.2e-58 229.2 187 64.7
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 3.4e-57 226.5 285 47.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 9.4e-52 208.4 135 74.1
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 7.0e-47 192.2 112 81.2
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.9e-40 169.5 112 73.2
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.3e-32 144.8 81 81.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.1e-28 131.7 357 29.1
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 2.5e-28 130.6 80 76.2
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.0e-25 120.9 83 69.9
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 2.2e-16 90.9 54 75.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 7.8e-14 82.4 93 51.6
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 3.1e-10 70.5 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 6.4e-08 62.8 48 56.2
EL10Ac8g18875 Beta vulgaris HOM05D000028 ORTHO05D003251 5.4e-07 59.7 34 85.3


User provided reference genes

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