Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.5e-89 332.0 164 100.0
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.6e-54 216.5 159 69.8
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.8e-45 185.3 158 61.4
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 8.6e-37 157.5 160 58.1
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 5.6e-36 154.8 148 53.4
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.8e-35 152.5 136 56.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 4.7e-35 151.8 137 57.7
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.4e-34 150.2 138 55.8
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.3e-34 149.4 123 59.3
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 3.1e-34 149.1 139 56.1
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 6.8e-34 147.9 150 50.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.5e-33 146.7 137 54.7
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.5e-33 146.7 162 48.8
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 2.0e-33 146.4 151 57.0
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.4e-33 145.6 147 49.7
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 4.4e-33 145.2 148 50.0
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.8e-33 144.8 137 56.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 5.8e-33 144.8 132 57.6
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.7e-32 143.3 142 51.4
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-32 143.3 129 55.8
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.7e-32 143.3 136 52.9
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.2e-32 142.9 140 52.1
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 2.9e-32 142.5 158 50.6
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 3.7e-32 142.1 149 49.7
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.4e-32 141.4 129 55.0
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 8.3e-32 141.0 140 52.1
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 8.3e-32 141.0 128 56.2
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-31 140.6 129 55.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-31 140.6 129 55.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-31 140.6 129 55.0
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.1e-31 140.6 125 56.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-31 140.2 129 55.0
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 2.4e-31 139.4 123 57.7
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 3.2e-31 139.0 140 50.7
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 3.2e-31 139.0 128 57.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.2e-31 139.0 129 54.3
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.2e-31 139.0 129 54.3
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-31 138.7 129 54.3
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.2e-31 137.5 129 54.3
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.1e-30 136.3 129 53.5
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.1e-30 136.3 151 49.0
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.1e-30 136.3 150 48.0
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.7e-30 136.0 147 50.3
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 3.5e-30 135.6 146 50.7
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.8e-30 134.4 129 52.7
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-29 133.7 136 52.2
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-29 133.7 129 52.7
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.7e-29 133.3 141 50.4
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.7e-29 133.3 151 47.0
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 5.0e-29 131.7 145 50.3
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 6.6e-29 131.3 129 52.7
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 8.6e-29 131.0 138 52.9
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.1e-28 130.6 145 49.7
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-28 130.6 129 51.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.5e-28 130.2 140 48.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.5e-28 130.2 149 49.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 2.1e-27 126.3 135 46.7
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 2.1e-27 126.3 130 50.0
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 2.8e-27 125.9 131 48.9
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.8e-27 125.9 124 48.4
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.6e-27 125.6 133 45.1
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 8.1e-27 124.4 147 44.9
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.1e-27 124.4 113 54.9
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.8e-26 123.2 151 47.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 4.0e-26 122.1 125 49.6
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.9e-26 120.9 140 47.1
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 8.9e-26 120.9 149 45.0
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.2e-25 120.6 142 45.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.5e-25 120.2 130 49.2
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 2.0e-25 119.8 123 52.0
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 5.8e-25 118.2 146 47.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.7e-24 116.7 125 50.4
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.2e-24 116.3 133 48.1
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 6.4e-24 114.8 136 47.1
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 8.3e-24 114.4 136 49.3
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 9.2e-23 110.9 156 41.0
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.2e-22 110.5 141 43.3
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.6e-22 108.6 144 41.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.0e-21 107.5 144 43.8
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.0e-21 107.5 144 43.8
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.3e-21 106.3 124 49.2
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 5.1e-21 105.1 125 48.0
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 5.1e-21 105.1 104 53.8
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 8.6e-21 104.4 136 46.3
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.5e-20 103.6 131 47.3
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 2.8e-19 99.4 131 40.5
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.4e-18 97.1 60 76.7
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.8e-18 96.7 79 55.7
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 3.1e-18 95.9 137 41.6
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 4.0e-18 95.5 113 45.1
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 5.2e-18 95.1 213 34.3
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 8.9e-18 94.4 143 39.9
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.6e-17 92.8 132 43.2
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 4.4e-17 92.0 135 37.8
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 5.8e-17 91.7 132 42.4
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 9.9e-17 90.9 140 39.3
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.3e-16 90.5 130 43.1
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.7e-16 90.1 132 42.4
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 2.2e-16 89.7 124 42.7
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.2e-16 89.7 109 43.1
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-16 89.7 96 47.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.9e-16 89.4 133 42.9
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 4.9e-16 88.6 85 51.8
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.9e-16 88.6 128 39.1
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 6.4e-16 88.2 123 43.9
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 8.4e-16 87.8 131 42.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 1.1e-15 87.4 134 41.8
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.1e-15 87.4 124 43.5
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 2.4e-15 86.3 124 43.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.2e-15 85.5 72 54.2
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 5.4e-15 85.1 133 39.1
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 9.2e-15 84.3 134 41.0
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.2e-14 84.0 130 39.2
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.2e-14 84.0 132 40.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.6e-14 83.6 100 47.0
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.1e-14 83.2 76 55.3
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.5e-14 82.4 135 40.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.3e-13 80.5 135 40.7
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.7e-13 80.1 131 42.7
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 2.3e-13 79.7 65 56.9
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 5.1e-13 78.6 129 39.5
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.6e-11 73.6 76 48.7
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.4e-10 70.5 129 39.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-10 70.5 101 41.6
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 6.9e-10 68.2 87 41.4
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.6e-09 66.2 58 56.9
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.4e-09 65.9 58 56.9
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 3.4e-09 65.9 112 33.9
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 7.6e-09 64.7 56 55.4
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 1.6e-06 57.0 101 38.6
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 1.6e-06 57.0 45 62.2
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.5e-06 55.8 56 55.4


User provided reference genes

Program Settings