Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.8e-36 155.2 70 100.0
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.8e-36 155.2 70 100.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 5.3e-36 153.7 70 97.1
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 84.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 82.9
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 84.3
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.8e-29 131.3 69 85.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 82.9
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.7e-29 131.0 70 81.4
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 3.7e-29 131.0 70 84.3
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 3.7e-29 131.0 70 82.9
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.8e-29 130.6 70 80.0
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 4.8e-29 130.6 70 82.9
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 6.3e-29 130.2 70 81.4
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 82.9
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 82.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 8.2e-29 129.8 69 81.2
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 81.4
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 81.4
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 81.4
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 80.0
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 81.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 81.4
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 82.9
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 82.9
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 80.0
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 81.4
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 78.6
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 81.4
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 82.9
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 80.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 80.0
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 80.0
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 80.0
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 80.0
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 78.6
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 80.0
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 81.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 81.4
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 5.3e-28 127.1 70 80.0
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 5.3e-28 127.1 70 78.6
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 5.3e-28 127.1 70 80.0
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 6.9e-28 126.7 70 80.0
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 6.9e-28 126.7 70 78.6
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 80.0
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 78.6
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.2e-27 125.9 70 80.0
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-27 125.9 69 81.2
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.2e-27 125.9 70 77.1
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 78.6
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.5e-27 125.6 70 81.4
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 1.5e-27 125.6 69 76.8
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 78.6
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 78.6
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 78.6
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 80.0
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 80.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 80.0
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 2.6e-27 124.8 70 78.6
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 3.4e-27 124.4 70 77.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 77.1
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 77.1
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 77.1
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 5.9e-27 123.6 69 76.8
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 5.9e-27 123.6 70 77.1
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 80.0
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 77.1
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 78.6
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 77.1
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 77.1
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 77.1
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 75.7
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 75.7
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.7e-26 122.1 69 79.7
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.7e-26 122.1 70 78.6
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.7e-26 122.1 69 75.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.7e-26 122.1 70 75.7
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.2e-26 121.7 70 77.1
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 3.8e-26 120.9 70 80.0
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 3.8e-26 120.9 70 77.1
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 3.8e-26 120.9 70 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 6.5e-26 120.2 69 75.4
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 75.7
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 74.3
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 8.5e-26 119.8 70 78.6
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 8.5e-26 119.8 68 75.0
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 8.5e-26 119.8 70 75.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 8.5e-26 119.8 61 82.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 8.5e-26 119.8 68 75.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-25 119.4 61 83.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.1e-25 119.4 61 83.6
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.4e-25 119.0 70 77.1
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 4.2e-25 117.5 70 71.4
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 75.7
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 5.5e-25 117.1 94 61.7
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 75.7
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 75.7
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 71.4
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 7.2e-25 116.7 68 75.0
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.2e-25 116.7 70 72.9
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 9.4e-25 116.3 70 71.4
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 1.2e-24 115.9 68 75.0
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 71.4
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 75.7
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 75.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.6e-24 115.5 70 72.9
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.6e-24 115.5 70 75.7
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 3.6e-24 114.4 66 75.8
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 3.6e-24 114.4 61 82.0
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 3.6e-24 114.4 70 74.3
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-24 114.4 70 71.4
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.6e-24 114.4 60 80.0
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 4.7e-24 114.0 70 68.6
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 6.1e-24 113.6 70 71.4
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 7.9e-24 113.2 61 80.3
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 7.9e-24 113.2 61 80.3
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.9e-24 113.2 70 72.9
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 7.9e-24 113.2 70 72.9
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.9e-24 113.2 70 70.0
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 70.0
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 74.3
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 74.3
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-23 112.5 97 57.7
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.4e-23 112.5 98 57.1
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.4e-23 112.5 97 57.7
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-23 112.5 70 70.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.8e-23 112.1 68 72.1
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.3e-23 111.7 65 76.9
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.3e-23 111.7 65 76.9
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.0e-23 111.3 61 78.7
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.0e-23 111.3 70 68.6
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 3.0e-23 111.3 70 68.6
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.9e-23 110.9 60 80.0
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.1e-23 110.5 70 72.9
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 5.1e-23 110.5 70 67.1
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 6.7e-23 110.2 70 65.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 8.8e-23 109.8 70 68.6
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.1e-22 109.4 70 70.0
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-22 109.0 68 70.6
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.5e-22 109.0 70 68.6
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.5e-22 109.0 70 68.6
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.5e-22 109.0 70 68.6
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.5e-22 109.0 70 68.6
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.3e-22 107.8 59 78.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 5.7e-22 107.1 69 69.6
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.7e-22 106.3 61 73.8
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.7e-21 105.5 68 67.6
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.8e-21 104.8 69 66.7
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.3e-21 103.6 59 76.3
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.8e-20 102.1 70 64.3
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-20 102.1 61 70.5
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.1e-20 100.9 61 70.5
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 6.9e-20 100.1 67 65.7
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 9.1e-20 99.8 69 63.8
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.2e-19 99.4 99 52.5
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.5e-19 99.0 70 64.3
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.5e-19 99.0 58 70.7
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.0e-19 98.6 70 62.9
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 3.4e-19 97.8 68 67.6
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.9e-19 97.1 70 61.4
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 7.7e-19 96.7 61 70.5
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.0e-18 96.3 58 69.0
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 8.5e-18 93.2 57 68.4
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.1e-17 92.8 58 72.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.5e-17 91.7 48 72.9
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 2.5e-17 91.7 59 66.1
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 2.5e-17 91.7 58 67.2
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.2e-16 89.4 69 56.5
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 2.1e-16 88.6 41 87.8
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.8e-13 77.4 44 79.5
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.8e-13 77.4 44 79.5
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.1e-12 76.3 61 59.0
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.9e-10 68.2 34 70.6
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.2e-09 64.7 70 50.0
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.6e-08 62.4 70 48.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.0e-07 59.7 70 48.6
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-07 58.9 43 62.8
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 3.3e-06 54.7 36 66.7


User provided reference genes

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