Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.8e-60 235.7 120 100.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.0e-55 218.4 117 93.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.1e-44 183.3 117 77.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.4e-44 182.2 111 81.1
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.3e-44 181.0 117 74.4
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.3e-44 181.0 117 78.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.9e-44 180.6 117 75.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-43 179.9 119 73.9
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.6e-43 178.7 117 76.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.6e-43 178.7 117 76.1
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.4e-43 178.3 119 71.4
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.9e-43 177.6 112 81.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.7e-43 177.2 119 74.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-42 176.8 112 80.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.3e-42 176.4 117 76.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-42 176.4 117 74.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.2e-42 175.6 117 74.4
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.9e-42 175.3 117 73.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 5.0e-42 174.5 117 75.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.0e-42 174.5 112 80.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 5.0e-42 174.5 117 72.6
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.0e-42 174.5 117 73.5
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 6.5e-42 174.1 117 72.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 8.5e-42 173.7 117 72.6
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.5e-42 173.7 112 79.5
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.5e-42 173.7 112 79.5
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.4e-41 172.9 119 73.9
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.9e-41 172.6 119 70.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.5e-41 172.2 117 70.9
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.5e-41 172.2 116 72.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.5e-41 172.2 117 70.1
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.2e-41 171.8 117 73.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.2e-41 171.8 116 73.3
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.2e-41 171.8 118 72.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-41 171.0 112 78.6
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 7.2e-41 170.6 117 70.9
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 9.4e-41 170.2 119 73.1
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.6e-40 169.5 110 75.5
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.1e-40 169.1 117 71.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.7e-40 168.7 117 68.4
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.7e-40 168.7 112 74.1
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 3.6e-40 168.3 112 74.1
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.6e-40 168.3 117 70.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 6.1e-40 167.5 119 69.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 7.9e-40 167.2 110 73.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-39 166.8 116 69.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.0e-39 166.8 116 73.3
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.0e-39 166.8 110 73.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.8e-39 166.0 112 73.2
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.3e-39 165.6 119 68.9
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.3e-39 165.6 118 71.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.3e-39 165.6 118 71.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 3.0e-39 165.2 116 71.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.9e-39 164.9 107 79.4
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.9e-39 164.9 117 67.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 5.1e-39 164.5 117 69.2
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 8.8e-39 163.7 112 70.5
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-38 163.3 116 71.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-38 163.3 116 71.6
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.5e-38 162.9 117 67.5
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.5e-38 162.9 117 66.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.0e-38 162.5 112 70.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.0e-38 162.5 117 65.8
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-38 162.5 134 62.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.3e-38 161.8 116 67.2
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.3e-38 161.8 116 67.2
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 4.4e-38 161.4 117 67.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.4e-38 160.6 117 67.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.7e-37 159.5 116 69.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.7e-37 159.5 117 66.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.2e-37 159.1 117 65.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.8e-37 158.7 112 66.1
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-37 158.7 116 69.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-37 158.7 116 69.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.7e-37 158.3 113 69.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 4.8e-37 157.9 117 66.7
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 6.3e-37 157.5 118 66.1
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 8.2e-37 157.1 118 62.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.1e-36 156.8 111 70.3
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.4e-36 155.6 109 70.6
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.1e-36 154.8 117 63.2
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 7.0e-36 154.1 110 68.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.2e-35 153.3 106 68.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-35 153.3 118 65.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-35 152.9 105 69.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.5e-35 152.9 117 63.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.5e-35 152.9 109 68.8
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.6e-35 152.1 109 67.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.5e-35 151.4 117 63.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.9e-35 151.0 117 63.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 5.9e-35 151.0 120 65.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 7.7e-35 150.6 117 62.4
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.2e-34 149.1 117 61.5
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-34 148.3 115 60.0
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.8e-34 148.3 117 62.4
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 6.5e-34 147.5 117 62.4
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.5e-34 147.5 117 60.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.1e-33 146.7 109 69.7
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-33 146.7 115 58.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-33 146.0 117 62.4
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-33 146.0 115 59.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-33 145.6 115 60.9
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-32 143.3 112 63.4
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-32 142.5 112 63.4
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.1e-32 142.5 116 58.6
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 3.6e-32 141.7 99 71.7
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.7e-32 141.4 109 61.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.0e-32 140.6 115 57.4
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.0e-31 140.2 119 57.1
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.0e-31 140.2 110 61.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-31 139.8 115 56.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.4e-31 139.8 108 63.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 3.0e-31 138.7 119 56.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.0e-31 138.7 112 62.5
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 3.0e-31 138.7 108 64.8
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.9e-31 138.3 111 60.4
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 3.9e-31 138.3 109 63.3
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 5.2e-31 137.9 112 60.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.5e-30 136.3 119 55.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.0e-30 136.0 100 68.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.6e-30 135.6 115 61.7
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.3e-30 135.2 118 58.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 9.7e-30 133.7 99 66.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.3e-29 133.3 118 57.6
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.3e-29 133.3 118 55.9
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-29 132.9 104 62.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.7e-29 132.9 104 62.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.7e-29 132.9 104 62.5
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.7e-29 132.9 114 57.9
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.7e-29 132.9 99 69.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.2e-29 132.5 106 62.3
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.2e-29 132.5 104 61.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.7e-29 131.7 104 63.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.7e-29 131.7 114 56.1
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-29 131.7 104 60.6
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-29 131.7 104 62.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.7e-29 131.7 106 60.4
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.8e-29 131.3 107 59.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 4.8e-29 131.3 109 61.5
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 6.3e-29 131.0 109 60.6
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.4e-28 129.8 121 57.0
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-28 129.4 104 59.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-28 129.4 104 59.6
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.8e-28 129.4 104 59.6
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.1e-28 128.3 104 59.6
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 4.1e-28 128.3 103 59.2
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 7.0e-28 127.5 111 58.6
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.0e-27 125.9 104 58.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-26 123.6 107 57.0
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.0e-26 123.6 107 57.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.7e-26 122.9 111 57.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.9e-26 122.1 110 52.7
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.9e-26 122.1 108 54.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.2e-25 117.5 66 83.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.6e-24 115.2 117 51.3
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 8.0e-24 114.0 111 52.3
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.8e-23 112.8 108 50.9
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.8e-23 110.5 100 52.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.3e-18 96.7 61 75.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 5.5e-17 91.3 93 51.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.1e-16 87.8 53 73.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-15 86.7 53 79.2
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.3e-15 85.9 64 70.3
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.4e-14 82.0 62 58.1
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.8e-13 78.2 91 40.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.4e-12 75.9 75 58.7
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.8e-10 68.6 55 63.6
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.1e-09 67.0 51 64.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.1e-09 67.0 51 64.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.5e-09 65.9 103 35.9
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-08 63.2 52 65.4
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-08 63.2 51 64.7
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.6e-08 62.0 52 63.5
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.7e-08 61.6 51 64.7


User provided reference genes

Program Settings