Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 7.9e-129 463.8 230 100.0
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.1e-87 327.0 202 84.7
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 6.4e-54 214.9 204 55.9
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.2e-37 159.5 82 90.2
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 6.4e-30 135.2 89 67.4
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.0e-27 127.9 232 35.8
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 7.3e-26 121.7 132 47.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 9.6e-26 121.3 81 61.7
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.1e-25 120.2 97 54.6
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.8e-25 119.8 81 61.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 6.2e-25 118.6 84 64.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.4e-24 117.5 123 49.6
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 3.1e-24 116.3 125 45.6
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 4.0e-24 115.9 217 36.9
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 4.0e-24 115.9 152 43.4
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 5.3e-24 115.5 145 42.8
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.5e-23 114.0 151 42.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.5e-23 114.0 88 56.8
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.5e-23 114.0 98 54.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 2.6e-23 113.2 136 41.9
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 2.6e-23 113.2 143 43.4
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 4.4e-23 112.5 95 51.6
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 4.4e-23 112.5 118 45.8
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 5.8e-23 112.1 85 51.8
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 7.6e-23 111.7 95 51.6
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 9.9e-23 111.3 115 43.5
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 9.9e-23 111.3 83 57.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.3e-22 110.9 198 36.4
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.7e-22 110.5 97 49.5
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 1.7e-22 110.5 97 49.5
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 1.7e-22 110.5 187 38.0
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.7e-22 110.5 123 39.8
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 2.9e-22 109.8 205 33.7
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 2.9e-22 109.8 98 54.1
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 2.9e-22 109.8 120 40.8
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.8e-22 109.4 81 61.7
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 3.8e-22 109.4 190 38.4
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.8e-22 109.4 146 40.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.8e-22 109.4 84 59.5
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.9e-22 109.0 215 32.1
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 4.9e-22 109.0 215 34.0
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 4.9e-22 109.0 215 34.0
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 4.9e-22 109.0 145 40.0
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 8.4e-22 108.2 82 53.7
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.1e-21 107.8 84 54.8
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 1.1e-21 107.8 214 31.8
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.1e-21 107.8 167 41.9
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.4e-21 107.5 85 51.8
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.9e-21 107.1 99 51.5
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.9e-21 107.1 97 56.7
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.9e-21 107.1 116 41.4
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 2.4e-21 106.7 82 56.1
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.4e-21 106.7 217 34.1
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 3.2e-21 106.3 85 49.4
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 5.4e-21 105.5 121 43.0
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 5.4e-21 105.5 172 39.0
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.3e-21 104.8 80 56.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 9.3e-21 104.8 158 39.2
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 9.3e-21 104.8 136 39.7
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 9.3e-21 104.8 115 42.6
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.2e-20 104.4 82 54.9
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.6e-20 104.0 110 41.8
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 2.1e-20 103.6 85 48.2
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 2.1e-20 103.6 166 37.3
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 2.1e-20 103.6 91 49.5
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.7e-20 103.2 109 44.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.7e-20 103.2 85 48.2
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.5e-20 102.8 79 51.9
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 3.5e-20 102.8 138 41.3
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.5e-20 102.8 111 44.1
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 4.6e-20 102.4 85 47.1
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 6.0e-20 102.1 85 47.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 6.0e-20 102.1 153 39.2
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 7.8e-20 101.7 112 45.5
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.0e-19 101.3 205 32.2
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.0e-19 101.3 91 53.8
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.0e-19 101.3 112 45.5
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.7e-19 100.5 85 49.4
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.3e-19 100.1 84 53.6
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.0e-19 99.8 120 39.2
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 3.0e-19 99.8 123 42.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.0e-19 99.8 83 55.4
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 3.9e-19 99.4 98 45.9
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 5.1e-19 99.0 222 33.8
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.1e-19 99.0 115 43.5
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 8.7e-19 98.2 128 40.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 8.7e-19 98.2 80 55.0
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.9e-18 97.1 115 40.9
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.5e-18 96.7 74 54.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 3.3e-18 96.3 197 34.0
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 4.3e-18 95.9 93 46.2
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 7.3e-18 95.1 168 35.1
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 7.3e-18 95.1 111 41.4
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 7.3e-18 95.1 85 48.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 9.6e-18 94.7 231 29.9
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.3e-17 94.4 97 46.4
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.3e-17 94.4 243 29.6
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.8e-17 93.2 80 47.5
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 4.8e-17 92.4 182 33.5
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 6.2e-17 92.0 172 33.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 6.2e-17 92.0 78 44.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 8.1e-17 91.7 74 54.1
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.1e-16 91.3 111 42.3
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 5.3e-16 89.0 100 45.0
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.2e-15 87.8 88 46.6
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.2e-15 87.8 191 30.9
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.6e-15 86.7 85 47.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 2.6e-15 86.7 85 47.1
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 3.4e-15 86.3 88 45.5
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 4.5e-15 85.9 88 45.5
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 9.9e-15 84.7 123 37.4
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.7e-14 84.0 94 40.4
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 1.4e-13 80.9 60 55.0
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 9.3e-13 78.2 64 54.7
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.5e-12 76.3 78 42.3
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.0e-12 75.5 49 65.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.3e-11 73.6 89 33.7
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 3.9e-11 72.8 127 35.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 5.6e-10 68.9 102 35.3
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.1e-08 64.7 133 29.3
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 5.3e-08 62.4 79 38.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 9.0e-08 61.6 66 48.5
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 5.8e-07 58.9 54 46.3


User provided reference genes

Program Settings