Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.9e-242 841.3 490 100.0
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.0e-210 735.3 489 90.0
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 2.5e-148 529.6 507 67.3
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 3.3e-140 502.7 503 68.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.5e-132 477.2 450 68.7
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 4.4e-129 465.7 463 65.7
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.1e-127 461.1 450 66.9
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 7.3e-124 448.4 445 67.4
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.1e-122 444.5 439 65.1
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 4.9e-120 435.6 471 62.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 1.1e-119 434.5 477 62.3
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 4.1e-119 432.6 440 65.7
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 3.5e-118 429.5 437 66.8
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 7.8e-118 428.3 446 63.9
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 2.3e-117 426.8 428 65.7
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 5.1e-117 425.6 487 60.2
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 5.6e-116 422.2 450 63.3
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.1e-115 420.2 450 63.3
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.1e-115 420.2 450 63.6
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 3.6e-115 419.5 433 65.4
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 8.1e-115 418.3 450 62.9
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.0e-114 416.0 442 63.8
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 8.9e-114 414.8 450 62.9
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 3.4e-113 412.9 441 58.7
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 5.8e-113 412.1 442 63.1
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 9.9e-113 411.4 440 64.5
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 9.9e-113 411.4 437 63.8
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.7e-112 410.6 452 57.3
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.9e-112 409.8 442 63.1
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 8.4e-112 408.3 474 60.8
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.4e-111 406.8 446 61.4
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 6.0e-110 402.1 446 61.9
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.3e-109 401.0 451 61.4
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.5e-108 396.7 447 61.5
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 9.6e-108 394.8 450 61.3
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 9.6e-108 394.8 440 61.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 2.1e-107 393.7 447 60.2
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 2.1e-107 393.7 450 61.3
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 5.2e-106 389.0 452 60.6
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 3.4e-105 386.3 440 59.8
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 5.8e-105 385.6 440 60.7
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 3.8e-104 382.9 389 67.6
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 6.4e-104 382.1 440 59.8
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 2.4e-103 380.2 444 59.0
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 3.2e-103 379.8 481 57.4
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.1e-102 377.1 440 59.3
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 2.3e-101 373.6 451 58.8
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 3.9e-101 372.9 437 60.0
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.5e-100 370.9 442 60.0
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.9e-100 370.5 388 65.2
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 4.3e-100 369.4 444 58.8
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.2e-97 361.3 437 60.2
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 4.4e-97 359.4 442 59.3
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.4e-95 354.4 452 58.4
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.7e-93 347.4 388 63.9
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 2.3e-93 347.1 437 54.2
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.5e-92 343.6 385 63.1
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.3e-92 343.2 446 55.6
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 5.6e-92 342.4 437 53.5
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.3e-91 341.3 447 57.9
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.8e-91 340.1 445 57.1
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 4.8e-91 339.3 431 55.9
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.1e-90 338.2 419 57.3
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.6e-89 333.6 440 56.4
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 5.8e-89 332.4 436 53.2
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 9.9e-89 331.6 456 51.8
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.8e-88 329.7 436 53.7
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 8.4e-88 328.6 431 53.1
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.4e-87 327.8 478 52.3
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.2e-87 326.6 464 56.2
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 5.5e-87 325.9 405 58.8
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.2e-86 324.7 411 58.9
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 4.6e-86 322.8 442 53.2
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 6.7e-85 318.9 437 53.1
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.5e-84 317.0 467 50.5
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.6e-83 314.3 437 53.3
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 4.0e-82 309.7 454 51.5
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.4e-81 306.6 451 54.8
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.7e-80 304.3 441 51.9
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.7e-80 304.3 438 55.3
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.9e-80 303.5 454 51.3
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 3.8e-80 303.1 411 56.4
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 6.5e-80 302.4 441 51.9
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 9.3e-79 298.5 440 38.9
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.3e-77 294.7 441 49.2
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 3.0e-77 293.5 448 52.9
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 5.1e-77 292.7 447 53.7
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 1.1e-76 291.6 380 41.8
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 1.1e-76 291.6 380 41.8
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.9e-76 290.8 442 53.4
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 3.4e-73 280.0 396 55.3
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 7.6e-73 278.9 440 51.8
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 6.3e-67 259.2 477 47.8
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.4e-61 241.5 389 54.8
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.8e-58 231.1 441 45.4
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.8e-58 231.1 441 45.4
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 1.1e-55 221.9 386 50.5
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 9.4e-55 218.8 369 36.0
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 9.4e-55 218.8 369 36.0
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 1.7e-48 198.0 206 48.5
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 2.5e-47 194.1 208 47.6
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.0e-45 188.7 194 49.0
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-42 178.7 312 34.9
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.2e-27 127.9 109 62.4
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 5.8e-12 76.6 50 68.0
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 6.0e-09 66.6 50 62.0
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 6.0e-09 66.6 50 62.0
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 1.7e-08 65.1 144 31.2
Ah.06g188680 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.3e-08 64.7 152 30.9
Ah.06g188690 Amaranthus hybridus HOM05D002479 ORTHO05D002675 2.3e-08 64.7 152 30.9
Duzib116G0309 Durio zibethinus HOM05D000001 ORTHO05D000003 5.0e-08 63.5 208 23.1
DCAR_019981 Daucus carota HOM05D000001 ORTHO05D000003 1.1e-07 62.4 169 23.1
AUR62006894 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.5e-07 62.0 133 30.1
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 1.9e-07 61.6 162 28.4
Nn3g18338 Nelumbo nucifera HOM05D000424 ORTHO05D008586 1.9e-07 61.6 129 30.2
AUR62000543 Chenopodium quinoa HOM05D002479 ORTHO05D002675 2.5e-07 61.2 133 30.8
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 2.5e-07 61.2 167 25.7
Aa31LG6G2860 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.3e-07 60.8 434 19.8
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 3.3e-07 60.8 147 27.2
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 4.3e-07 60.5 148 31.8
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 4.3e-07 60.5 189 25.9
Ah.01g005340 Amaranthus hybridus HOM05D006749 ORTHO05D008352 5.6e-07 60.1 163 28.2
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 5.6e-07 60.1 131 29.8
TAR365G0241 Trochodendron aralioides HOM05D002479 ORTHO05D002675 5.6e-07 60.1 152 28.9
Zm00001eb369070 Zea mays HOM05D007168 ORTHO05D000355 5.6e-07 60.1 116 32.8
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 7.3e-07 59.7 147 25.9
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 1.6e-06 58.5 184 25.5
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 1.6e-06 58.5 162 27.8
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-06 58.2 142 24.6
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-06 58.2 142 24.6
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 2.8e-06 57.8 142 30.3
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 2.8e-06 57.8 160 25.6
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.8e-06 57.8 120 24.2
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 2.8e-06 57.8 189 25.4
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 2.8e-06 57.8 129 26.4
VMungo0720G1235 Vigna mungo HOM05D002479 ORTHO05D002675 2.8e-06 57.8 126 29.4
Rhsim12G0106100 Rhododendron simsii HOM05D000424 ORTHO05D008586 3.6e-06 57.4 131 28.2
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 3.6e-06 57.4 142 29.6
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 4.7e-06 57.0 171 24.0
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 4.7e-06 57.0 135 28.9
Glyma.16G043600 Glycine max HOM05D000424 ORTHO05D000355 4.7e-06 57.0 100 30.0
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 6.2e-06 56.6 152 22.4
COL.COLO4_05239 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.2e-06 56.6 187 25.1
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 6.2e-06 56.6 128 29.7
Cpa.g.sc43.5 Carica papaya HOM05D000424 ORTHO05D008586 8.1e-06 56.2 126 29.4
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 8.1e-06 56.2 130 30.8


User provided reference genes

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