Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 7.9e-97 357.1 176 100.0
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 3.0e-80 302.0 175 85.1
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 5.9e-68 261.2 169 74.6
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 5.9e-68 261.2 169 74.6
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 6.5e-67 257.7 170 73.5
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 2.8e-65 252.3 172 70.3
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 8.0e-65 250.8 168 72.0
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 6.8e-64 247.7 170 68.2
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 8.8e-64 247.3 173 68.2
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.2e-63 246.9 158 75.3
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.5e-63 246.5 177 68.4
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.5e-63 246.5 158 74.1
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.0e-63 246.1 177 68.4
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 3.4e-63 245.4 169 69.8
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 4.4e-63 245.0 152 73.7
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 9.8e-63 243.8 165 72.7
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.3e-62 243.4 177 65.5
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.7e-62 243.0 166 69.9
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 2.2e-62 242.7 167 67.7
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 2.8e-62 242.3 160 72.5
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 3.7e-62 241.9 168 69.6
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 4.9e-62 241.5 155 74.2
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 4.9e-62 241.5 177 65.5
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 6.3e-62 241.1 172 64.5
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.8e-61 239.6 150 72.7
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.8e-61 239.6 173 71.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 5.4e-61 238.0 175 66.3
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 9.2e-61 237.3 166 67.5
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.2e-60 236.9 167 66.5
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.0e-60 236.1 157 68.8
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 3.5e-60 235.3 184 67.9
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 4.5e-60 235.0 160 68.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 4.5e-60 235.0 154 69.5
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 5.9e-60 234.6 169 64.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 5.9e-60 234.6 171 65.5
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 7.8e-60 234.2 153 71.9
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 7.8e-60 234.2 166 65.7
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.0e-59 233.8 165 66.7
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.3e-59 233.4 171 64.9
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 2.3e-59 232.6 164 66.5
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.3e-59 232.6 160 68.8
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.3e-59 232.6 160 68.8
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.9e-59 232.3 173 61.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 2.9e-59 232.3 166 64.5
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 5.0e-59 231.5 159 68.6
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 6.6e-59 231.1 161 66.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 8.6e-59 230.7 171 64.3
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.1e-58 230.3 171 64.3
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.9e-58 229.6 161 65.8
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 2.5e-58 229.2 159 67.9
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 2.5e-58 229.2 159 67.9
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.5e-58 229.2 172 62.8
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.5e-58 229.2 166 68.1
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 3.3e-58 228.8 152 68.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 3.3e-58 228.8 168 64.3
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.3e-58 228.8 168 64.3
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 3.3e-58 228.8 170 63.5
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 4.3e-58 228.4 163 66.9
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 4.3e-58 228.4 155 67.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 4.3e-58 228.4 164 65.9
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 5.6e-58 228.0 167 64.7
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 5.6e-58 228.0 169 65.7
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 7.3e-58 227.6 153 68.6
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 9.5e-58 227.3 174 63.8
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.6e-57 226.5 168 63.7
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.1e-57 226.1 168 64.9
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 2.8e-57 225.7 152 67.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.7e-57 224.9 169 64.5
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 6.1e-57 224.6 170 60.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 8.0e-57 224.2 165 61.2
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.0e-56 223.8 166 61.4
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.0e-56 223.8 153 68.6
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 1.4e-56 223.4 152 65.8
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 2.3e-56 222.6 149 69.1
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.3e-56 222.6 165 63.0
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 3.0e-56 222.2 161 66.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.0e-56 221.9 168 63.1
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 8.9e-56 220.7 168 62.5
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 8.9e-56 220.7 151 64.9
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 1.2e-55 220.3 152 65.8
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.5e-55 219.9 162 64.8
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.0e-55 219.5 158 63.3
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 4.4e-55 218.4 157 65.0
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 4.4e-55 218.4 154 64.9
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 4.4e-55 218.4 206 55.8
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 7.5e-55 217.6 151 68.2
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.3e-54 216.9 134 75.4
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 1.1e-53 213.8 181 58.6
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.4e-48 196.8 192 54.2
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 3.1e-48 195.7 170 56.5
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 1.4e-45 186.8 124 68.5
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.4e-45 184.9 124 71.0
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 3.5e-44 182.2 125 66.4
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 4.6e-44 181.8 152 53.9
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 3.3e-42 175.6 122 68.9
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.6e-41 173.3 165 55.2
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 8.1e-41 171.0 154 51.9
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.1e-40 169.1 132 62.1
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.4e-37 160.2 160 53.1
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 2.4e-37 159.5 165 54.5
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 7.1e-37 157.9 150 54.0
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-30 137.1 92 68.5
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.4e-29 132.9 101 65.3
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-29 131.3 92 63.0
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 5.6e-26 121.7 77 71.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 6.9e-24 114.8 115 52.2
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.3e-22 110.5 68 72.1
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.7e-19 100.1 54 87.0
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.6e-17 93.6 74 64.9
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.7e-11 71.6 44 75.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.6e-09 67.0 41 70.7
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.4e-08 63.9 40 65.0
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 1.2e-07 60.8 42 66.7
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 5.8e-07 58.5 31 71.0


User provided reference genes

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