Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.9e-188 660.6 308 100.0
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.9e-126 454.9 269 83.6
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 6.7e-99 364.8 210 81.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 6.7e-99 364.8 210 81.0
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.5e-98 363.6 178 92.1
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 4.3e-98 362.1 177 93.2
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 5.6e-98 361.7 178 92.7
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 7.4e-98 361.3 178 91.6
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 9.6e-98 360.9 178 91.6
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.1e-97 359.8 177 91.5
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.1e-97 359.8 178 92.1
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 2.8e-97 359.4 178 92.1
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.8e-97 359.4 178 91.0
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.8e-97 359.4 180 90.6
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 2.8e-97 359.4 178 92.7
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.8e-97 359.4 178 90.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 3.7e-97 359.0 178 91.6
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 3.7e-97 359.0 178 92.1
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 4.8e-97 358.6 178 90.4
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.8e-97 358.6 177 91.5
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.8e-97 358.6 178 91.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 6.2e-97 358.2 178 90.4
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 6.2e-97 358.2 178 90.4
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 8.1e-97 357.8 178 91.0
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.1e-96 357.5 178 91.0
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.4e-96 357.1 178 91.6
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.4e-96 357.1 178 91.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.4e-96 357.1 178 90.4
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.4e-96 356.3 177 91.0
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 4.0e-96 355.5 178 90.4
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 5.3e-96 355.1 177 91.0
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 9.0e-96 354.4 178 90.4
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 9.0e-96 354.4 177 89.8
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 9.0e-96 354.4 178 89.3
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.2e-95 354.0 177 91.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.2e-95 354.0 178 90.4
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.2e-95 354.0 178 90.4
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.2e-95 354.0 177 91.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.5e-95 353.6 178 89.9
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.0e-95 353.2 178 90.4
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.0e-95 353.2 177 89.3
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.4e-95 352.4 178 89.9
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.5e-95 352.1 178 90.4
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 4.5e-95 352.1 180 88.9
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 7.6e-95 351.3 178 88.8
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 7.6e-95 351.3 178 88.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 9.9e-95 350.9 178 89.3
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.3e-94 350.5 178 89.9
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.3e-94 350.5 176 90.3
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.7e-94 350.1 177 89.8
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.7e-94 350.1 179 89.9
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 2.2e-94 349.7 178 88.8
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 2.9e-94 349.4 178 89.3
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 3.8e-94 349.0 177 89.3
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.9e-94 348.6 177 89.8
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.9e-94 348.6 179 89.9
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 6.4e-94 348.2 178 88.2
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 6.4e-94 348.2 178 88.2
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 6.4e-94 348.2 178 88.2
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 6.4e-94 348.2 177 89.8
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 8.4e-94 347.8 182 88.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.1e-93 347.4 177 88.7
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 5.5e-93 345.1 201 80.6
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 7.1e-93 344.7 178 88.2
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 7.1e-93 344.7 178 88.2
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.5e-92 342.4 177 87.0
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 6.0e-92 341.7 194 81.4
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.0e-91 340.9 178 87.6
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.3e-91 340.5 177 87.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.3e-91 339.7 177 86.4
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 3.0e-91 339.3 178 88.2
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 5.1e-91 338.6 178 86.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.7e-91 338.2 177 87.6
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.1e-90 337.4 178 85.4
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.1e-90 337.4 178 85.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.9e-90 336.7 178 86.0
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.9e-90 336.7 177 85.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.9e-90 336.7 178 84.3
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.5e-90 336.3 178 84.8
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.5e-90 336.3 178 84.8
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 2.5e-90 336.3 178 84.8
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 2.5e-90 336.3 178 84.8
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 3.3e-90 335.9 179 86.6
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.2e-89 331.6 177 82.5
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.4e-88 329.7 178 83.1
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.6e-87 326.2 179 84.4
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.6e-87 326.2 177 80.8
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 4.5e-87 325.5 176 85.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 5.8e-87 325.1 170 85.9
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 7.6e-87 324.7 176 83.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.0e-86 324.3 162 91.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 6.5e-86 321.6 168 86.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.4e-85 320.5 155 93.5
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.4e-85 320.5 162 90.7
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.5e-85 319.7 155 93.5
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 1.2e-84 317.4 154 92.9
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.2e-84 317.4 203 75.4
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 5.1e-83 312.0 155 91.6
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 3.7e-81 305.8 154 87.7
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.8e-81 305.4 177 75.1
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.8e-80 303.5 154 85.7
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 3.4e-79 299.3 177 71.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.6e-76 290.4 196 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 6.7e-75 285.0 177 70.1
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.1e-74 284.3 142 90.1
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.8e-72 276.9 169 78.1
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.8e-72 276.9 169 78.1
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.3e-70 270.8 142 84.5
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 5.0e-70 268.9 188 66.0
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.1e-69 267.7 130 93.1
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 5.7e-66 255.4 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 7.0e-64 248.4 130 86.2
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.6e-60 236.1 126 83.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.7e-60 235.7 121 88.4
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 4.5e-55 219.2 144 73.6
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.7e-44 182.6 91 90.1
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 5.4e-40 169.1 89 88.8
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 8.6e-38 161.8 89 84.3
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.6e-34 150.2 72 93.1
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 3.9e-22 109.8 52 96.2
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 5.0e-22 109.4 195 33.8
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 6.2e-20 102.4 48 93.8
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 6.8e-19 99.0 164 36.0
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 3.0e-14 83.6 40 92.5
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 5.1e-14 82.8 42 83.3
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.8e-12 77.0 64 60.9


User provided reference genes

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