Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.1e-145 520.0 274 100.0
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 6.3e-117 424.5 225 99.1
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.7e-69 266.9 192 77.6
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.4e-37 158.3 300 40.0
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 5.5e-36 155.6 265 43.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 9.6e-33 144.8 322 37.6
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 9.6e-33 144.8 304 40.5
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.1e-32 143.7 319 37.9
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.1e-32 143.7 327 36.7
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.8e-32 143.3 322 38.5
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.7e-32 142.9 317 37.9
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 8.2e-32 141.7 319 36.7
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.1e-31 139.8 283 36.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 6.9e-31 138.7 315 37.5
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 6.9e-31 138.7 316 37.3
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.0e-31 138.3 334 36.5
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 9.0e-31 138.3 338 35.8
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.0e-31 138.3 338 36.4
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.0e-31 138.3 338 35.8
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 9.0e-31 138.3 302 39.7
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-30 137.5 305 39.0
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.0e-30 137.1 316 37.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.0e-30 137.1 308 37.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.0e-30 137.1 295 38.3
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.6e-30 136.7 326 36.5
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 3.4e-30 136.3 310 40.0
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.6e-30 135.2 313 39.0
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.0e-29 134.8 337 36.2
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.3e-29 134.4 316 37.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.3e-29 134.4 327 34.6
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.7e-29 134.0 330 35.2
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.2e-29 133.7 326 36.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 2.2e-29 133.7 190 47.9
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 4.9e-29 132.5 314 36.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 4.9e-29 132.5 310 35.2
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.5e-29 132.1 191 45.0
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 8.4e-29 131.7 279 38.7
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 8.4e-29 131.7 331 34.7
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 8.4e-29 131.7 322 35.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-28 131.3 336 36.9
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.4e-28 131.0 323 36.2
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.4e-28 131.0 301 36.2
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.5e-28 130.2 307 35.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.5e-28 130.2 325 36.0
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.2e-28 129.8 329 36.2
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 5.5e-28 129.0 209 44.5
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 5.5e-28 129.0 317 36.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.3e-28 128.3 306 35.9
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.2e-27 127.9 297 35.7
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.2e-27 127.9 329 33.7
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.6e-27 127.5 322 34.8
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.1e-27 127.1 306 35.6
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.7e-27 126.7 177 50.3
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 2.7e-27 126.7 246 41.5
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.7e-27 126.7 301 36.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 4.6e-27 125.9 324 35.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 4.6e-27 125.9 305 37.0
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-26 124.8 208 44.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 1.0e-26 124.8 208 44.7
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.3e-26 124.4 299 36.1
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.8e-26 124.0 329 35.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.8e-26 124.0 297 35.7
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.3e-26 123.6 269 35.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.9e-26 122.9 322 33.5
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-26 122.1 213 41.8
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-26 122.1 213 41.8
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 6.7e-26 122.1 221 40.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 8.7e-26 121.7 213 41.8
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 8.7e-26 121.7 213 41.8
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-25 121.3 213 41.8
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.3e-25 119.4 313 34.5
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.3e-25 119.4 322 33.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 5.7e-25 119.0 316 34.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.7e-25 119.0 219 40.2
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 7.4e-25 118.6 322 35.7
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.4e-25 118.6 322 34.5
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.3e-24 117.9 295 35.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 2.8e-24 116.7 327 33.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.7e-24 116.3 198 43.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 8.2e-24 115.2 313 35.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.1e-23 114.8 324 34.3
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 9.0e-23 111.7 187 42.8
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.2e-22 111.3 301 32.9
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.6e-22 110.2 350 32.0
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 5.9e-22 109.0 320 34.7
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 7.6e-22 108.6 253 39.1
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.0e-21 108.2 318 33.3
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.8e-21 106.3 248 39.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 6.5e-21 105.5 324 31.8
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.4e-20 104.4 228 36.8
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.9e-20 104.0 208 39.4
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.2e-20 103.2 312 33.3
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 5.5e-20 102.4 244 36.1
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 1.2e-19 101.3 264 39.0
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.2e-19 101.3 234 37.6
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.6e-19 100.9 222 40.1
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 2.7e-19 100.1 278 32.7
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 4.6e-19 99.4 284 33.1
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 4.6e-19 99.4 314 34.1
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 6.1e-19 99.0 305 31.8
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.0e-18 98.2 271 33.6
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.0e-18 98.2 317 33.4
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.0e-18 98.2 87 66.7
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.4e-18 97.8 276 34.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.4e-18 97.8 276 34.1
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 3.9e-18 96.3 76 73.7
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.9e-18 96.3 279 34.1
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 5.1e-18 95.9 90 65.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 5.1e-18 95.9 279 31.9
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.1e-17 94.7 275 33.1
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.9e-17 94.0 180 42.2
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.5e-17 93.6 82 67.1
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.3e-17 93.2 78 67.9
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.7e-17 92.4 268 36.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 7.4e-17 92.0 267 35.2
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 9.7e-17 91.7 265 33.6
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.3e-16 91.3 262 37.8
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.7e-16 90.9 196 38.8
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.7e-16 89.7 258 36.0
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 6.3e-16 89.0 323 30.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 8.2e-16 88.6 184 40.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.4e-15 87.0 75 65.3
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 4.1e-15 86.3 275 32.7
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 4.1e-15 86.3 216 38.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 5.3e-15 85.9 78 61.5
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.3e-15 85.9 163 39.3
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-15 85.1 84 59.5
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.2e-14 84.7 233 34.3
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-14 84.7 189 37.0
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-14 84.0 189 37.0
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 2.6e-14 83.6 259 32.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 7.7e-14 82.0 330 30.0
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 7.7e-14 82.0 330 30.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.7e-13 80.9 198 39.4
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.7e-13 80.9 329 30.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.7e-13 80.9 326 30.7
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.9e-13 80.1 309 30.1
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 3.8e-13 79.7 231 33.3
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 8.5e-13 78.6 179 37.4
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.5e-12 77.0 267 31.1
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 3.2e-12 76.6 302 29.8
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 4.2e-12 76.3 266 32.0
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 4.2e-12 76.3 258 34.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 5.5e-12 75.9 244 29.5
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 5.5e-12 75.9 294 30.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 9.4e-12 75.1 258 33.7
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 2.1e-11 73.9 82 56.1
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 7.9e-11 72.0 248 31.5
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.3e-10 70.5 167 35.9
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 2.8e-08 63.5 228 30.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 6.3e-08 62.4 107 40.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.0e-06 57.4 140 35.7
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 4.5e-06 56.2 282 25.9


User provided reference genes

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