Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 2155.2 1077 100.0
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 2036.5 1047 96.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1903.6 1077 87.6
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1859.7 1081 85.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1771.1 1076 81.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1079 73.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1079 72.7
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1087 72.2
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1591.2 1089 71.8
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1078 72.2
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1084 72.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1078 72.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1080 71.5
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1086 71.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1078 71.2
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1087 71.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1085 72.1
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1092 70.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1108 69.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1087 71.4
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1082 71.3
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 983 78.5
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1076 71.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1564.7 1077 71.7
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1077 72.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1086 70.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 1084 70.6
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 1088 70.2
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1086 70.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1552.3 1089 70.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1079 70.3
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1550.0 1087 69.9
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1074 70.9
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1086 70.3
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1076 69.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1084 69.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1545.0 1084 69.8
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1078 70.6
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1085 70.1
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1076 69.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1542.3 1081 69.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1085 70.0
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1541.2 1084 69.7
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 1086 70.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1537.7 1087 70.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1076 69.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1076 70.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1091 69.3
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 1078 69.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1076 69.3
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1084 68.8
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1526.1 1087 68.3
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1525.0 1079 69.6
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1074 69.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1085 68.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1078 69.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1078 69.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1085 68.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1520.8 1078 69.5
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1084 68.8
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1084 68.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1517.3 1086 70.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1517.3 1079 68.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1171 65.4
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 1079 68.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1079 68.6
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1513.4 1085 68.1
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1513.0 1084 68.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1088 69.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 1079 68.5
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1084 69.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1170 65.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1106 67.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1093 67.8
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1504.2 1094 67.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1084 68.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1080 68.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1012 72.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1083 67.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1083 67.3
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1494.9 1077 67.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1494.6 1080 67.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1491.1 1084 67.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1489.6 1073 68.1
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1485.7 1078 67.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1485.7 1077 68.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1483.8 1077 67.7
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1483.8 1077 67.7
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1481.5 1078 67.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1478.4 1076 67.4
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1478.4 1085 66.4
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1477.6 1077 67.5
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 1077 67.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1474.5 1077 67.3
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 1076 67.4
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 1069 67.2
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1465.3 1150 63.7
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1460.3 993 71.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1456.8 1098 66.2
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1449.1 1085 67.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1448.0 1074 66.5
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1447.6 1104 65.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1444.9 1101 65.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1439.9 1098 65.7
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1435.2 1107 64.3
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1426.4 1076 65.1
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1402.1 999 69.4
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1392.5 1098 62.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1381.3 1078 64.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1362.1 1075 64.8
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1288.1 1074 61.8
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1219.5 791 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 1083 52.6
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1162.5 1078 53.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1161.4 1082 53.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1142.1 1120 51.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1130.9 1082 52.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1102.4 690 77.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1085.5 727 73.5
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.3e-310 1068.1 672 76.8
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.7e-298 1029.6 752 67.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.4e-291 1005.4 838 59.3
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-265 919.8 815 57.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 4.2e-265 918.7 610 75.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.1e-244 849.4 956 47.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.5e-233 812.0 628 65.3
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.8e-226 789.3 500 76.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 8.5e-218 761.5 633 60.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.5e-206 724.2 974 44.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.9e-169 600.9 567 54.9
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.9e-163 578.9 426 68.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.2e-141 507.7 300 80.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 9.1e-127 459.1 310 71.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.4e-124 451.8 382 60.7
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.4e-73 280.8 289 51.2
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.9e-63 248.8 241 54.4
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.7e-61 242.3 206 60.2
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.1e-60 239.6 137 78.1
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.5e-44 186.0 139 60.4
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 4.5e-33 147.9 216 43.5
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.5e-30 138.3 156 48.1
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.3e-29 136.3 133 51.9
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.9e-29 134.8 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.3e-24 119.8 105 56.2
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.2e-22 113.2 97 57.7
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.8e-19 102.1 88 55.7
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 3.6e-14 85.1 47 85.1
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 3.0e-13 82.0 147 35.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.4e-12 78.2 49 67.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 6.9e-10 70.9 77 44.2
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.4e-09 68.6 111 40.5
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.1e-06 59.3 39 69.2


User provided reference genes

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