Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.7e-188 662.5 335 100.0
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.7e-162 575.5 317 93.7
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 1.1e-118 430.6 300 76.3
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 2.2e-108 396.4 315 67.6
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 3.8e-108 395.6 328 66.8
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 3.2e-107 392.5 291 71.8
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 4.2e-107 392.1 298 69.5
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 5.5e-107 391.7 290 71.4
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 9.4e-107 391.0 286 71.0
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 1.8e-105 386.7 285 71.2
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.0e-105 386.0 309 67.0
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 4.0e-105 385.6 281 71.9
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 5.2e-105 385.2 320 67.5
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 6.8e-105 384.8 253 77.1
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.2e-104 384.0 296 68.2
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.5e-104 383.6 306 65.7
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 2.0e-104 383.3 311 67.2
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.6e-104 382.9 282 71.6
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 2.6e-104 382.9 312 67.3
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 3.4e-104 382.5 306 67.0
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 3.4e-104 382.5 312 65.4
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.7e-104 381.7 315 64.1
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 9.8e-104 380.9 303 67.0
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 9.8e-104 380.9 261 75.1
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.7e-103 380.2 285 70.2
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 3.7e-103 379.0 312 66.7
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 3.7e-103 379.0 318 65.1
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 6.3e-103 378.3 307 66.1
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 8.3e-103 377.9 308 66.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 3.1e-102 375.9 308 66.6
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 3.1e-102 375.9 308 66.6
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 9.1e-102 374.4 282 68.8
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 9.1e-102 374.4 308 66.2
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.7e-101 372.9 238 78.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 3.5e-101 372.5 293 66.6
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.5e-101 372.5 294 68.7
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 4.5e-101 372.1 237 78.9
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.9e-101 371.7 241 77.6
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 5.9e-101 371.7 303 64.4
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 5.9e-101 371.7 245 78.0
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 1.0e-100 370.9 253 75.5
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 1.7e-100 370.2 277 69.3
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.7e-100 370.2 281 69.8
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.7e-100 370.2 294 67.7
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 2.3e-100 369.8 290 67.9
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 5.0e-100 368.6 252 74.6
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 6.5e-100 368.2 301 67.1
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 6.5e-100 368.2 259 71.0
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.5e-99 366.3 250 74.8
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 3.2e-99 365.9 266 72.2
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 3.2e-99 365.9 239 78.2
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 4.2e-99 365.5 296 65.2
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 5.5e-99 365.2 323 62.5
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 3.6e-98 362.5 243 74.9
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 8.0e-98 361.3 235 77.4
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 1.0e-97 360.9 262 71.8
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 5.2e-97 358.6 294 65.3
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 1.5e-96 357.1 308 63.0
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 2.6e-96 356.3 304 63.2
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 1.3e-95 354.0 308 62.7
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 2.8e-95 352.8 315 60.3
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.7e-95 352.4 387 53.5
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 6.3e-95 351.7 254 70.9
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 6.3e-95 351.7 250 72.0
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 6.3e-95 351.7 234 74.8
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 8.3e-95 351.3 239 74.9
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 8.3e-95 351.3 228 78.1
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 2.4e-94 349.7 250 71.6
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 2.4e-94 349.7 234 73.5
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 2.4e-94 349.7 235 74.0
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 3.1e-94 349.4 250 71.6
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 3.1e-94 349.4 250 71.6
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 4.1e-94 349.0 250 71.6
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 5.4e-94 348.6 250 71.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 5.4e-94 348.6 250 71.6
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.6e-93 347.1 250 70.8
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 1.0e-92 344.4 250 70.8
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 3.8e-92 342.4 212 82.1
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 5.0e-92 342.0 388 52.1
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.0e-92 342.0 212 80.2
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 5.0e-92 342.0 263 68.8
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 6.6e-92 341.7 251 68.9
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 8.6e-92 341.3 239 70.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.5e-91 340.5 309 59.5
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.5e-91 339.7 252 67.5
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 4.3e-91 339.0 249 67.9
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 9.5e-91 337.8 313 60.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 2.8e-90 336.3 250 69.6
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 3.6e-90 335.9 253 69.2
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 4.0e-89 332.4 252 67.5
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.2e-88 330.9 221 73.3
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 5.4e-86 322.0 317 57.7
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.3e-84 316.6 352 53.4
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.3e-84 316.6 236 68.6
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 3.0e-84 316.2 234 67.5
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 6.6e-84 315.1 232 72.4
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 5.6e-83 312.0 248 65.3
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.6e-82 310.5 231 68.8
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 4.7e-82 308.9 288 60.4
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 3.1e-81 306.2 198 77.3
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 3.4e-80 302.8 302 59.6
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 4.4e-80 302.4 204 75.0
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 7.5e-80 301.6 252 62.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 4.3e-75 285.8 260 59.6
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.9e-71 272.3 254 58.7
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 6.4e-71 271.9 236 62.3
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 1.6e-66 257.3 281 51.2
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.8e-66 256.5 182 68.7
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.2e-64 251.1 212 67.0
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 7.6e-64 248.4 210 64.8
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.5e-59 234.2 224 58.0
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 5.6e-59 232.3 168 75.6
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.1e-51 208.0 208 52.4
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.4e-49 200.3 164 65.9
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 3.1e-49 199.9 168 63.1
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 9.3e-38 161.8 164 54.9
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 5.1e-36 156.0 180 53.9
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.6e-34 151.0 112 70.5
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 5.1e-28 129.4 243 37.0
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 3.3e-27 126.7 277 39.0
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 6.9e-25 119.0 144 49.3
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.5e-24 117.9 191 43.5
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 4.2e-22 109.8 158 44.9
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 8.8e-20 102.1 66 68.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.7e-18 96.7 241 30.3
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 6.9e-17 92.4 107 49.5
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.5e-16 91.3 234 27.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 7.2e-14 82.4 70 61.4
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.4e-12 78.2 105 50.5
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.4e-12 78.2 48 79.2
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 3.9e-12 76.6 53 67.9
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 2.2e-07 60.8 67 53.7


User provided reference genes

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