Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.9e-85 317.0 153 100.0
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.9e-80 300.8 174 86.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.1e-69 265.8 167 79.6
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-66 256.5 161 78.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.0e-63 246.9 167 76.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.2e-62 240.7 167 72.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.2e-61 240.0 170 69.4
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.2e-61 240.0 171 71.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.6e-61 239.6 162 73.5
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.7e-61 238.8 158 74.1
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.7e-61 238.8 162 71.6
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.7e-61 238.8 162 72.2
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.6e-61 238.4 162 71.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.1e-61 237.7 164 70.7
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 6.1e-61 237.7 169 70.4
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.0e-60 236.9 162 71.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.0e-60 236.9 166 70.5
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.8e-60 236.1 162 70.4
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.8e-60 236.1 166 69.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.3e-60 235.7 161 71.4
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.3e-60 235.7 176 70.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.0e-60 235.3 152 75.7
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.2e-60 234.6 161 72.7
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.2e-60 234.6 152 73.7
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.7e-60 234.2 158 72.8
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 6.7e-60 234.2 151 75.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.7e-60 234.2 163 70.6
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 8.8e-60 233.8 175 68.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.8e-60 233.8 172 68.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 8.8e-60 233.8 152 75.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-59 233.4 158 72.8
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.1e-59 233.4 162 69.1
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.1e-59 233.4 154 74.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.5e-59 233.0 152 73.7
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.0e-59 232.6 163 69.9
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.3e-59 231.9 162 69.8
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.3e-59 231.9 152 72.4
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.4e-59 231.5 161 70.8
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 5.7e-59 231.1 160 71.2
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.7e-59 231.1 156 72.4
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 7.5e-59 230.7 172 69.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 9.7e-59 230.3 168 69.0
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-58 229.9 152 73.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-58 229.6 162 69.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-58 229.6 162 69.1
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.7e-58 229.6 169 66.9
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.7e-58 229.6 153 71.9
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.2e-58 229.2 156 71.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.2e-58 229.2 160 70.6
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.2e-58 229.2 152 73.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-58 229.2 152 73.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-58 229.2 152 73.0
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-58 228.8 152 72.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-58 228.8 152 72.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.8e-58 228.8 169 68.0
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.8e-58 228.8 151 73.5
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.8e-58 228.8 151 74.8
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.7e-58 228.4 156 71.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.7e-58 228.4 165 67.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.7e-58 228.4 169 69.8
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.7e-58 228.4 166 68.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 4.8e-58 228.0 156 69.9
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.3e-58 227.6 153 71.2
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 8.2e-58 227.3 152 71.7
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 8.2e-58 227.3 152 71.7
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.2e-58 227.3 152 72.4
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.2e-58 227.3 152 72.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 8.2e-58 227.3 151 72.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.1e-57 226.9 151 72.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-57 226.9 161 68.3
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.4e-57 226.5 169 69.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.4e-57 226.5 167 67.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.8e-57 226.1 152 71.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-57 226.1 153 74.5
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-57 225.7 152 71.1
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.4e-57 225.7 152 71.1
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.4e-57 225.7 152 72.4
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 3.1e-57 225.3 166 68.1
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 4.1e-57 224.9 162 68.5
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.1e-57 224.9 169 68.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 5.3e-57 224.6 152 70.4
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 5.3e-57 224.6 152 70.4
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 5.3e-57 224.6 152 70.4
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.3e-57 224.6 167 66.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 5.3e-57 224.6 169 68.0
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.0e-57 224.2 156 69.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 7.0e-57 224.2 152 71.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-57 224.2 152 70.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 7.0e-57 224.2 152 71.1
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 7.0e-57 224.2 152 70.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.0e-57 224.2 162 67.3
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 7.0e-57 224.2 169 67.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.0e-57 224.2 156 69.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 9.1e-57 223.8 151 72.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 9.1e-57 223.8 156 69.2
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.1e-57 223.8 149 73.8
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.2e-56 223.4 164 66.5
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.6e-56 223.0 162 68.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.6e-56 223.0 169 68.0
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-56 222.6 152 70.4
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.0e-56 222.6 167 65.3
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.0e-56 222.6 170 67.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.7e-56 222.2 170 67.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.5e-56 221.9 170 67.6
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.5e-56 221.9 152 70.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 5.9e-56 221.1 152 71.1
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 5.9e-56 221.1 168 64.9
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.7e-56 220.7 161 67.7
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.0e-55 220.3 167 65.9
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.0e-55 220.3 157 66.2
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.0e-55 220.3 157 66.2
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-55 220.3 153 71.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-55 219.9 131 78.6
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.3e-55 219.9 170 67.6
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.7e-55 219.5 167 65.9
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.7e-55 219.5 146 73.3
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.9e-55 218.8 174 62.1
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.9e-55 218.8 157 68.8
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.9e-55 218.8 157 68.8
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.9e-55 218.8 160 66.2
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 6.5e-55 217.6 152 68.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 5.5e-54 214.5 165 63.6
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-53 213.4 227 52.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.6e-53 213.0 173 61.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.1e-53 212.6 173 61.3
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.0e-52 210.3 173 60.7
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-52 210.3 165 63.6
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.0e-52 210.3 165 61.8
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.0e-52 208.8 170 61.2
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 6.8e-52 207.6 152 66.4
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 6.8e-52 207.6 152 66.4
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-51 206.8 165 61.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 5.7e-51 204.5 173 57.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 3.7e-50 201.8 153 62.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.3e-50 201.1 158 62.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.1e-49 198.7 158 62.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.9e-47 192.2 161 59.0
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.8e-47 191.8 151 62.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.1e-46 190.3 161 58.4
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-44 183.0 144 64.6
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 9.8e-43 177.2 154 55.8
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 4.5e-40 168.3 117 68.4
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.0e-39 164.9 120 65.8
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-38 163.7 132 60.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 5.6e-38 161.4 190 47.9
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 8.0e-37 157.5 170 52.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 2.2e-34 149.4 134 55.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 8.3e-34 147.5 87 85.1
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.2e-32 143.7 134 53.0
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.0e-32 142.9 111 60.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 3.5e-32 142.1 83 85.5
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-31 139.4 83 83.1
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.3e-31 139.4 133 49.6
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.9e-30 136.3 134 50.7
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.9e-28 127.5 131 55.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 8.3e-26 120.9 91 67.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.9e-25 119.8 85 72.9
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-21 107.1 78 67.9
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.9e-18 95.9 174 36.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.7e-18 95.5 121 42.1
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 8.3e-18 94.4 120 39.2
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.4e-17 93.6 57 71.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 3.2e-17 92.4 48 75.0
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 5.4e-17 91.7 79 59.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-16 89.7 139 36.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-16 89.7 139 36.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 6.6e-15 84.7 48 77.1
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.6e-13 79.0 154 33.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.6e-13 79.0 45 80.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 7.6e-11 71.2 47 59.6
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 5.4e-09 65.1 57 52.6
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.0e-07 59.3 35 74.3
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 4.3e-06 55.5 73 39.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 4.3e-06 55.5 73 39.7


User provided reference genes

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