Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-217 759.2 374 100.0
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.7e-101 373.6 208 85.6
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 5.3e-90 335.5 258 65.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 5.8e-89 332.0 228 70.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 6.2e-83 312.0 228 66.2
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 8.1e-83 311.6 228 65.8
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.4e-82 310.8 228 64.5
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 3.1e-82 309.7 228 64.0
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.2e-81 307.8 230 63.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.5e-81 307.4 228 64.0
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 3.4e-81 306.2 228 63.6
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.8e-81 305.4 228 64.9
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 7.6e-81 305.1 228 63.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-80 304.3 230 63.5
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.2e-80 303.5 229 62.4
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 6.4e-80 302.0 228 63.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 6.4e-80 302.0 229 63.8
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.4e-79 300.8 228 64.9
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 3.2e-79 299.7 228 62.3
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 5.4e-79 298.9 230 62.6
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 9.3e-79 298.1 232 61.6
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 9.3e-79 298.1 228 62.3
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.2e-78 297.7 232 62.5
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.7e-78 296.6 228 61.4
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 2.7e-78 296.6 230 61.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.7e-78 296.6 228 61.0
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 4.6e-78 295.8 258 58.5
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 4.6e-78 295.8 258 58.5
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 4.6e-78 295.8 258 58.5
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 4.6e-78 295.8 228 62.7
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 4.6e-78 295.8 229 63.3
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 4.6e-78 295.8 228 61.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 7.9e-78 295.0 228 62.7
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.3e-77 294.3 229 61.6
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-77 293.9 258 58.5
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.8e-77 293.9 258 58.5
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.3e-77 293.5 258 57.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 3.0e-77 293.1 272 55.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.9e-77 292.7 228 61.0
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 3.9e-77 292.7 227 62.1
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 3.9e-77 292.7 228 61.8
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 6.7e-77 292.0 228 62.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 6.7e-77 292.0 270 55.6
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 8.7e-77 291.6 228 62.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.1e-76 291.2 228 60.1
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.5e-76 290.0 228 59.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 7.4e-76 288.5 229 61.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.4e-76 288.5 228 62.3
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 9.6e-76 288.1 270 54.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 9.6e-76 288.1 270 54.4
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.8e-75 286.6 210 66.2
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.7e-75 286.2 228 60.5
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.1e-75 285.0 228 59.2
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-74 284.3 268 54.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-74 283.9 270 54.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-74 283.9 270 54.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-74 283.9 270 54.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.4e-74 283.5 228 60.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.1e-74 283.1 228 60.5
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 3.1e-74 283.1 228 59.2
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.0e-74 282.7 228 59.6
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.0e-74 282.7 297 53.9
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.9e-74 282.0 218 60.6
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 6.9e-74 282.0 228 61.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 9.0e-74 281.6 228 60.1
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.2e-73 281.2 227 57.3
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.5e-73 279.3 230 57.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.5e-73 279.3 230 57.8
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.3e-72 277.7 228 59.6
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.3e-72 277.7 228 60.5
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.3e-72 277.7 247 55.5
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.7e-72 277.3 238 56.7
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.2e-72 276.9 247 55.5
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.9e-72 276.6 228 57.9
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 3.8e-72 276.2 283 50.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.1e-71 274.6 230 59.1
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.1e-71 274.6 230 59.1
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.2e-71 273.1 228 58.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 7.1e-71 271.9 229 57.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 9.3e-71 271.6 210 62.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.1e-70 270.4 240 54.2
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.0e-70 268.9 228 57.5
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.0e-69 268.1 230 57.0
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.0e-69 266.5 228 57.5
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 3.9e-69 266.2 228 58.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.5e-68 263.5 227 56.8
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 9.6e-68 261.5 228 59.2
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 9.6e-68 261.5 228 57.0
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.5e-65 254.2 209 58.4
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 7.6e-65 251.9 256 48.8
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 3.5e-62 243.0 182 65.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.3e-61 240.4 340 40.0
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 8.7e-61 238.4 229 50.2
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.5e-60 237.7 255 50.6
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.9e-60 237.3 228 53.9
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-60 236.1 333 40.5
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.8e-59 233.4 233 52.4
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.9e-55 220.7 251 46.2
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.2e-54 218.0 182 58.2
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.6e-54 217.6 228 48.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.6e-54 216.1 230 49.6
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.6e-54 216.1 294 44.6
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.9e-54 215.3 230 49.1
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 2.5e-52 210.3 228 49.1
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.2e-51 205.3 285 41.8
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.1e-50 204.9 222 50.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 6.9e-50 202.2 216 50.0
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 8.5e-48 195.3 225 41.8
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.9e-47 194.1 223 44.8
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.5e-44 184.5 253 41.1
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 3.7e-43 179.9 134 61.9
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 5.0e-40 169.5 232 39.2
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.7e-38 163.7 228 39.0
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.1e-36 158.3 114 67.5
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.1e-36 158.3 114 67.5
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 5.5e-31 139.4 120 57.5
AUR62042412 Chenopodium quinoa HOM05D023975 ORTHO05D014923 2.6e-28 130.6 126 58.7
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 7.0e-26 122.5 95 63.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 4.5e-25 119.8 93 62.4
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.0e-24 118.6 97 60.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-24 118.2 90 60.0
AUR62002311 Chenopodium quinoa HOM05D014653 ORTHO05D014923 2.2e-24 117.5 124 59.7
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 2.9e-24 117.1 81 66.7
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 3.8e-24 116.7 95 62.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.2e-23 113.6 137 45.3
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.7e-22 110.5 94 56.4
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.8e-21 107.8 63 71.4
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 4.0e-21 106.7 94 58.5
AUR62025078 Chenopodium quinoa HOM05D023975 ORTHO05D137704 5.2e-21 106.3 72 79.2
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.3e-19 101.7 75 60.0
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.2e-19 100.9 52 80.8
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.0e-17 94.4 66 60.6
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 3.5e-17 93.6 111 40.5
AUR62002568 Chenopodium quinoa HOM05D023975 ORTHO05D014923 7.7e-17 92.4 74 71.6
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.5e-15 87.4 100 49.0
AUR62001192 Chenopodium quinoa HOM05D014653 ORTHO05D014923 5.5e-15 86.3 55 78.2
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.8e-14 84.0 72 52.8
AUR62015002 Chenopodium quinoa HOM05D014653 ORTHO05D014923 1.8e-13 81.3 54 75.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 7.5e-12 75.9 34 85.3
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.3e-11 75.1 34 88.2
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.8e-11 73.9 65 58.5
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 1.1e-07 62.0 55 49.1
EL10Ac3g06086 Beta vulgaris HOM05D014653 ORTHO05D014923 1.5e-07 61.6 63 46.0
EL10Ac4g08890 Beta vulgaris HOM05D000356 ORTHO05D000265 1.9e-07 61.2 61 49.2
AUR62016854 Chenopodium quinoa HOM05D001355 ORTHO05D004435 1.9e-07 61.2 71 52.1


User provided reference genes

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