Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 0.0e+00 1456.0 709 100.0
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 0.0e+00 1226.8 677 89.1
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 0.0e+00 1095.9 710 75.8
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 3.0e-304 1048.1 711 72.0
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.4e-248 863.2 720 60.7
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.6e-241 838.6 709 60.9
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 2.1e-236 822.8 714 58.8
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 4.6e-236 821.6 737 57.1
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.9e-235 818.5 715 60.0
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 8.6e-235 817.4 712 59.3
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 9.5e-234 813.9 715 59.6
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 6.2e-233 811.2 718 58.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.1e-232 810.4 720 57.4
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 5.2e-232 808.1 712 57.7
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 8.9e-232 807.4 715 59.4
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.5e-231 806.6 722 57.3
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.5e-231 806.6 720 57.9
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.7e-230 803.1 736 57.5
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.9e-230 802.4 718 58.2
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 6.4e-230 801.2 729 57.6
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.4e-229 799.3 708 58.3
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 3.2e-229 798.9 719 57.7
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 9.2e-229 797.3 738 57.0
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.2e-228 797.0 732 57.0
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.1e-228 796.2 721 58.3
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.5e-228 795.4 738 56.9
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.0e-227 793.9 723 56.7
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 3.0e-227 792.3 712 57.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 5.1e-227 791.6 711 57.8
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 5.1e-227 791.6 712 57.7
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 1.1e-226 790.4 727 56.4
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 3.3e-226 788.9 708 58.5
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 3.3e-226 788.9 737 55.8
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 4.3e-226 788.5 708 57.5
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 3.6e-225 785.4 738 56.2
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 4.7e-225 785.0 709 56.8
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.7e-225 785.0 723 56.7
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 8.1e-225 784.3 724 56.5
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 8.1e-225 784.3 724 57.7
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.4e-224 783.5 738 56.1
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 2.4e-224 782.7 717 55.1
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 5.3e-224 781.6 723 56.6
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 5.8e-223 778.1 735 55.8
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 7.6e-223 777.7 709 56.3
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 2.2e-222 776.2 709 56.8
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 2.2e-222 776.2 712 57.0
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 2.9e-222 775.8 721 56.4
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 3.8e-222 775.4 730 57.1
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 3.8e-222 775.4 724 55.8
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 3.8e-222 775.4 710 57.0
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 6.4e-222 774.6 706 56.9
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 8.4e-222 774.2 710 56.9
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 8.4e-222 774.2 710 56.9
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 8.4e-222 774.2 710 56.9
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 8.4e-222 774.2 708 56.2
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.4e-221 773.5 711 56.7
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.4e-221 773.5 712 55.8
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 1.9e-221 773.1 706 56.7
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 2.4e-221 772.7 712 56.5
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 9.3e-221 770.8 733 55.4
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 1.2e-220 770.4 721 56.3
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 2.1e-220 769.6 719 57.3
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 2.7e-220 769.2 722 55.5
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 4.6e-220 768.5 744 55.4
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 4.6e-220 768.5 726 56.2
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 1.0e-219 767.3 721 56.0
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 1.7e-219 766.5 730 56.0
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 3.9e-219 765.4 710 57.0
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 1.5e-218 763.5 715 56.5
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 1.5e-218 763.5 719 56.5
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 1.9e-218 763.1 709 55.7
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 7.3e-218 761.1 726 54.8
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 7.3e-218 761.1 728 56.2
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 1.3e-217 760.4 726 55.6
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 2.1e-217 759.6 707 55.6
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 3.6e-217 758.8 718 55.3
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 3.1e-216 755.7 726 55.2
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 5.3e-216 755.0 719 55.4
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 5.8e-215 751.5 725 53.8
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 2.2e-214 749.6 710 56.2
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 2.2e-214 749.6 715 55.8
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 3.8e-214 748.8 715 54.8
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 4.9e-214 748.4 727 52.7
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.9e-214 748.4 708 54.2
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 1.1e-213 747.3 734 53.5
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 1.4e-213 746.9 730 54.5
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 2.4e-213 746.1 717 55.1
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 4.2e-213 745.3 718 54.3
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.1e-212 743.0 719 54.5
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.5e-212 742.3 706 54.8
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.0e-211 740.7 718 55.3
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.3e-211 740.3 705 55.0
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.3e-211 740.3 723 54.2
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 5.1e-211 738.4 730 53.8
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 5.1e-211 738.4 710 54.4
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 5.1e-211 738.4 711 53.9
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.9e-210 736.5 718 54.9
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 4.3e-210 735.3 706 54.1
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.3e-209 733.8 711 54.3
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.3e-209 733.8 710 54.8
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 8.1e-209 731.1 725 54.6
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 3.1e-208 729.2 709 53.3
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 4.5e-207 725.3 737 53.1
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 1.7e-206 723.4 714 53.9
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.2e-206 723.0 711 53.9
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 1.1e-205 720.7 709 53.2
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.3e-201 707.2 707 51.5
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 3.7e-201 705.7 731 51.8
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.4e-199 699.1 716 52.2
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.0e-196 688.3 707 52.5
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 2.5e-194 682.9 707 51.6
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 9.0e-192 674.5 715 52.4
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 1.3e-190 670.6 720 50.3
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 1.6e-188 663.7 712 51.3
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.6e-188 662.1 706 49.6
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 1.0e-187 661.0 568 59.2
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.8e-187 660.2 706 49.7
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 5.7e-186 655.2 569 58.2
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.0e-179 632.9 681 49.6
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 6.7e-179 631.7 709 48.5
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 8.8e-179 631.3 731 49.2
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.2e-177 626.7 709 47.2
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 1.4e-176 624.0 713 49.4
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 5.7e-170 602.1 717 48.3
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 3.5e-167 592.8 724 46.5
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 1.3e-166 590.9 739 45.2
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 6.5e-166 588.6 724 46.4
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 2.5e-165 586.6 848 41.2
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 9.1e-152 541.6 691 45.0
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 3.6e-148 529.6 763 39.8
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 8.9e-147 525.0 553 51.2
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 1.6e-143 514.2 814 38.9
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 2.1e-140 503.8 724 40.5
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 7.3e-133 478.8 497 52.1
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 6.2e-132 475.7 521 50.1
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 3.8e-113 413.3 352 59.4
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 2.8e-108 397.1 346 58.7
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 6.9e-99 365.9 388 51.0
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 2.0e-98 364.4 419 48.2
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.1e-93 348.6 342 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 9.6e-93 345.5 926 29.4
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 9.3e-88 328.9 213 71.8
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 3.2e-80 303.9 326 47.9
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 3.2e-64 250.8 446 36.3
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.2e-64 250.4 399 38.6
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 7.2e-64 249.6 425 36.7
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 4.7e-55 220.3 177 62.7
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.1e-43 181.0 99 83.8
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 3.8e-41 174.1 117 65.0
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.5e-40 171.4 191 49.7
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 1.2e-29 136.0 147 52.4
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 9.2e-27 126.3 222 36.5
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.2e-26 125.9 96 57.3
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.2e-26 125.9 96 57.3
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.1e-23 115.2 78 67.9
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 8.9e-22 109.8 78 66.7
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 5.8e-21 107.1 88 60.2
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 8.3e-20 103.2 121 43.0
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 1.9e-16 92.0 163 33.1
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 2.5e-16 91.7 76 55.3
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.3e-16 90.9 97 48.5
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.3e-16 90.9 97 48.5
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 7.3e-16 90.1 60 70.0
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 1.4e-14 85.9 120 49.2
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 8.9e-14 83.2 435 22.5
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.2e-13 82.8 76 55.3
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 3.7e-12 77.8 104 48.1
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 8.3e-12 76.6 48 72.9
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 4.1e-11 74.3 59 57.6
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 9.2e-11 73.2 68 51.5
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.2e-10 72.8 62 51.6
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.2e-10 72.8 80 52.5
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 1.7e-09 68.9 59 54.2
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.7e-09 68.9 100 40.0
CDE02G3796 Ceratophyllum demersum HOM05D001905 ORTHO05D001820 7.3e-08 63.5 458 24.9
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 1.2e-07 62.8 119 34.5
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 4.7e-07 60.8 234 28.2
Duzib168G1449 Durio zibethinus HOM05D001905 ORTHO05D001820 1.4e-06 59.3 151 33.1
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.1e-06 58.2 81 37.0
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.0e-06 57.8 49 51.0
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 4.0e-06 57.8 136 33.1
Gohir.A01G121800 Gossypium hirsutum HOM05D001905 ORTHO05D001820 5.2e-06 57.4 201 30.8
Hma1.2p1_0394F.1_g143320 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 5.2e-06 57.4 200 29.5
Ciclev10016034m.g Citrus clementina HOM05D000710 ORTHO05D000336 8.9e-06 56.6 189 29.1
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 8.9e-06 56.6 309 23.3


User provided reference genes

Program Settings