Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 8.1e-83 310.5 168 100.0
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 3.3e-68 261.9 206 74.8
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 1.8e-45 186.4 165 67.3
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.6e-41 172.6 170 62.4
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.7e-40 169.9 202 55.9
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.7e-40 169.9 186 57.5
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 2.2e-40 169.5 111 78.4
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 6.5e-40 167.9 116 75.9
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 6.5e-40 167.9 116 75.9
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 8.5e-40 167.5 171 62.6
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.5e-39 166.0 153 64.1
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 2.5e-39 166.0 113 77.9
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 3.2e-39 165.6 116 74.1
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.6e-38 163.3 152 61.2
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 2.7e-38 162.5 168 60.7
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 4.7e-38 161.8 192 55.2
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 6.1e-38 161.4 198 54.5
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.0e-37 160.6 114 72.8
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.4e-37 160.2 116 71.6
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.4e-37 160.2 197 54.3
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 3.0e-37 159.1 149 61.7
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 4.0e-37 158.7 138 66.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 5.2e-37 158.3 116 70.7
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 6.7e-37 157.9 149 64.4
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 8.8e-37 157.5 135 65.2
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 8.8e-37 157.5 135 65.2
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 8.8e-37 157.5 136 66.9
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 8.8e-37 157.5 116 71.6
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.5e-36 156.8 142 66.2
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.5e-36 156.8 138 65.2
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.5e-36 156.8 114 72.8
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 2.6e-36 156.0 143 62.2
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 3.3e-36 155.6 171 58.5
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 5.7e-36 154.8 114 71.9
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.3e-35 153.7 151 60.9
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 1.7e-35 153.3 135 65.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 3.7e-35 152.1 169 55.0
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 4.8e-35 151.8 185 52.4
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 6.3e-35 151.4 154 61.0
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 8.2e-35 151.0 174 57.5
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 8.2e-35 151.0 179 55.3
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 1.1e-34 150.6 114 71.1
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.1e-34 149.1 150 58.0
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.1e-34 149.1 158 60.1
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 4.1e-34 148.7 111 68.5
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 4.1e-34 148.7 118 71.2
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 5.3e-34 148.3 168 54.8
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 7.0e-34 147.9 114 65.8
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 7.0e-34 147.9 162 56.2
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 9.1e-34 147.5 145 57.9
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 9.1e-34 147.5 169 55.0
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 9.1e-34 147.5 158 56.3
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.0e-33 146.4 114 65.8
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.7e-33 146.0 139 58.3
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.7e-33 146.0 114 67.5
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.5e-33 145.6 117 67.5
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 4.5e-33 145.2 160 56.9
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 4.5e-33 145.2 150 60.0
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.7e-33 144.4 117 66.7
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 7.7e-33 144.4 139 61.2
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.0e-32 144.1 149 57.7
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.3e-32 143.7 114 68.4
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.7e-32 143.3 142 60.6
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.2e-32 142.9 136 61.8
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.2e-32 142.9 116 68.1
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 5.0e-32 141.7 111 64.0
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 5.0e-32 141.7 133 58.6
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 5.0e-32 141.7 196 50.0
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 6.5e-32 141.4 148 54.1
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.5e-32 141.4 135 60.7
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 8.5e-32 141.0 155 56.8
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.9e-31 139.8 113 64.6
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.5e-31 139.4 155 55.5
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.5e-31 139.4 145 57.9
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-31 139.0 133 57.1
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.2e-31 139.0 133 57.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 5.5e-31 138.3 133 57.9
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 5.5e-31 138.3 112 62.5
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.2e-31 137.9 158 53.8
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 9.4e-31 137.5 116 62.9
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-30 137.1 164 50.0
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 1.2e-30 137.1 161 55.3
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 1.6e-30 136.7 172 52.3
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.1e-30 136.3 168 50.0
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.1e-30 136.3 111 64.0
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 2.7e-30 136.0 167 51.5
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 3.6e-30 135.6 154 52.6
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 4.7e-30 135.2 165 52.1
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 4.7e-30 135.2 165 51.5
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 4.7e-30 135.2 165 51.5
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 4.7e-30 135.2 165 51.5
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 6.1e-30 134.8 167 50.3
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 6.1e-30 134.8 154 52.6
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.1e-30 134.8 175 49.1
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-29 133.7 167 49.7
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.4e-29 133.7 138 55.1
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.4e-29 133.7 151 49.7
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.4e-29 133.7 133 55.6
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 5.2e-29 131.7 165 49.7
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 5.2e-29 131.7 170 52.4
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.0e-28 129.8 114 59.6
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 3.4e-28 129.0 113 61.1
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.4e-28 128.6 114 58.8
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.5e-28 127.9 95 70.5
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.8e-27 125.2 158 51.9
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 8.3e-27 124.4 163 49.7
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.4e-26 123.6 116 61.2
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 2.4e-26 122.9 112 58.0
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 4.1e-26 122.1 186 45.2
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 3.5e-25 119.0 161 49.7
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.3e-24 117.1 187 43.9
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.3e-24 117.1 187 43.9
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 2.9e-24 115.9 181 45.3
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.0e-24 115.2 139 50.4
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 6.5e-24 114.8 168 47.0
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 6.5e-24 114.8 168 47.0
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.5e-24 114.8 141 49.6
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.1e-23 114.0 181 44.8
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 1.5e-23 113.6 181 44.8
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 4.2e-23 112.1 170 45.9
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 4.2e-23 112.1 170 45.9
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 4.2e-23 112.1 170 45.9
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 2.1e-22 109.8 170 45.9
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.1e-22 109.8 82 72.0
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 6.1e-22 108.2 197 41.6
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 6.1e-22 108.2 122 52.5
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.0e-22 107.8 78 71.8
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 3.4e-20 102.4 135 50.4
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 3.4e-20 102.4 168 47.0
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 5.7e-20 101.7 111 49.5
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.7e-19 100.1 75 66.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 5.4e-18 95.1 151 45.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.1e-15 87.4 67 68.7
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 4.3e-15 85.5 195 40.0
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 9.5e-15 84.3 196 38.8
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.4e-10 69.7 79 53.2
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 9.5e-07 57.8 71 49.3


User provided reference genes

Program Settings