Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 0.0e+00 1098.2 548 100.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.1e-301 1037.3 561 93.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-270 935.3 539 88.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.5e-207 726.5 586 67.1
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 9.7e-202 707.2 574 65.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.4e-187 660.2 571 62.2
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 8.9e-179 630.9 578 60.2
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.9e-168 596.7 569 57.1
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-166 590.5 581 56.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 6.6e-166 588.2 576 56.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.9e-165 586.6 575 55.8
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.3e-165 585.5 581 56.1
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 6.8e-163 578.2 573 56.7
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.6e-162 576.2 578 55.0
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.4e-162 575.5 579 54.7
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 6.4e-161 571.6 573 54.1
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.3e-158 563.9 570 54.6
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.7e-158 563.5 577 54.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.3e-158 563.1 573 53.9
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.9e-158 562.4 557 55.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.6e-158 561.2 555 55.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 8.6e-158 561.2 556 56.3
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.5e-157 560.5 582 54.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.9e-157 560.1 502 59.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.3e-157 558.9 582 54.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 9.5e-157 557.8 603 53.1
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 4.7e-156 555.4 547 55.8
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.7e-153 547.0 561 54.5
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.7e-153 547.0 576 53.5
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 2.9e-153 546.2 561 54.4
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.7e-153 545.8 483 59.8
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.1e-152 544.3 565 53.6
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.4e-152 543.1 579 53.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.2e-152 542.7 561 54.5
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.1e-152 541.6 477 57.2
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.7e-151 539.7 575 52.3
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.7e-151 539.7 478 59.2
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 7.8e-151 538.1 479 58.2
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.0e-150 537.7 582 52.1
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.0e-150 537.7 572 53.8
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 8.6e-150 534.6 571 52.5
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.2e-148 530.8 576 51.6
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 6.2e-148 528.5 484 56.2
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.1e-147 527.7 547 53.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.4e-147 527.3 584 51.5
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.5e-146 523.9 481 58.4
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.5e-146 523.9 576 51.0
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.0e-146 523.5 582 50.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.4e-146 522.3 568 51.6
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 5.8e-146 521.9 477 57.2
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 7.6e-146 521.5 573 52.4
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 7.6e-146 521.5 569 50.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 9.9e-146 521.2 573 52.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.3e-145 520.8 564 52.5
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.3e-145 520.8 575 51.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.7e-145 520.4 569 50.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 4.9e-145 518.8 454 61.7
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 8.4e-145 518.1 575 51.8
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 8.4e-145 518.1 574 53.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.1e-144 517.7 575 51.8
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.4e-144 517.3 575 52.0
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.2e-143 514.2 573 53.1
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.2e-143 514.2 569 50.1
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.2e-143 514.2 578 50.2
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.8e-143 511.5 481 54.9
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 7.8e-143 511.5 574 52.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.0e-142 511.1 475 56.2
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.0e-142 509.6 575 49.9
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 6.6e-142 508.4 579 50.9
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.6e-142 508.4 498 54.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 8.7e-142 508.1 562 50.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.9e-141 506.9 578 51.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.5e-141 506.5 577 52.0
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.5e-141 506.5 578 49.5
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 4.3e-141 505.8 544 51.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 5.6e-141 505.4 555 52.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 7.3e-141 505.0 558 52.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.6e-140 503.8 561 52.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.1e-140 503.4 583 48.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-139 501.1 565 51.3
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 4.0e-139 499.2 587 49.6
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.9e-139 498.4 468 55.6
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.2e-138 497.7 550 52.5
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.8e-138 495.4 483 56.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 9.9e-138 494.6 529 52.7
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.9e-137 493.0 559 50.3
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 8.4e-137 491.5 562 49.1
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 3.0e-134 483.0 460 56.1
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 3.9e-134 482.6 516 53.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 3.3e-133 479.6 583 51.1
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.8e-132 476.5 652 44.3
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.6e-132 476.1 467 55.0
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 8.1e-132 474.9 573 46.9
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.9e-130 468.0 445 55.7
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 8.4e-129 464.9 558 50.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.4e-128 463.4 463 52.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.4e-128 463.4 542 50.6
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.5e-128 462.2 461 52.9
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.6e-127 460.7 539 46.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.7e-126 455.3 560 48.9
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.3e-125 453.0 438 54.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.3e-125 452.6 555 48.8
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 7.4e-125 451.8 438 54.6
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 9.6e-125 451.4 438 54.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.1e-124 450.3 605 43.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 4.8e-124 449.1 596 45.1
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.6e-122 443.4 574 48.3
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 5.8e-122 442.2 562 44.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.7e-121 440.7 445 51.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.7e-121 440.7 505 50.3
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.5e-120 435.6 548 47.1
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.6e-114 416.8 491 49.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.4e-112 411.0 569 42.2
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 6.7e-110 402.1 576 42.0
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 5.7e-109 399.1 384 61.2
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.6e-108 397.5 577 42.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.8e-102 377.5 513 42.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.7e-100 369.8 489 47.4
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.1e-96 358.2 428 46.0
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.2e-96 355.5 614 37.1
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.2e-96 355.5 614 37.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.0e-94 350.1 515 40.8
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.7e-93 345.9 515 41.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 4.8e-92 342.8 539 41.9
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.8e-92 342.8 519 40.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 8.2e-92 342.0 564 39.2
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.8e-86 324.3 489 41.1
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.3e-83 312.8 318 53.5
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 5.5e-80 302.8 306 53.3
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 4.0e-78 296.6 442 44.6
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.0e-77 294.3 561 35.5
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.7e-71 273.9 351 45.3
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.4e-69 266.9 249 53.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.9e-65 253.8 154 72.7
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.0e-61 241.1 726 28.9
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-57 228.4 583 30.9
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.0e-57 226.5 583 29.7
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.1e-56 225.3 488 35.5
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.7e-44 183.7 194 54.6
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.4e-43 181.8 229 46.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 4.0e-38 163.7 159 50.9
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.0e-37 161.4 196 49.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.4e-35 154.5 203 45.8
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.1e-34 151.4 221 42.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.9e-32 144.8 88 70.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.5e-32 144.4 174 48.9
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.3e-32 142.9 123 56.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 9.6e-32 142.5 185 45.9
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.1e-30 139.0 191 45.5
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.4e-27 127.9 94 64.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 7.3e-24 116.3 144 38.9
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.3e-23 115.5 135 41.5
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.6e-18 98.6 99 49.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 1.0e-17 95.9 68 60.3
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.0e-13 81.6 137 40.9
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.5e-08 64.7 39 74.4
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 1.8e-06 58.5 117 35.9


User provided reference genes

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