Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 9.2e-234 814.7 898 100.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.5e-100 370.9 790 87.0
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.9e-98 365.2 801 84.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.5e-79 300.8 271 57.9
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.9e-78 298.1 786 83.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 8.7e-75 286.6 780 80.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 5.5e-69 267.3 218 61.9
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.1e-68 265.4 216 62.5
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.1e-68 265.4 220 60.9
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 4.6e-68 264.2 221 62.0
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 6.1e-68 263.8 218 62.4
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.1e-67 260.8 202 64.9
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 6.7e-67 260.4 221 61.1
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 3.3e-66 258.1 198 64.6
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 3.3e-66 258.1 219 59.8
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 9.7e-66 256.5 212 59.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.3e-65 256.1 820 75.7
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 8.2e-65 253.4 222 61.7
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 9.1e-64 250.0 219 58.4
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.5e-63 249.2 221 57.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 3.8e-62 244.6 202 61.9
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.2e-61 241.5 226 56.6
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 7.2e-61 240.4 200 61.5
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.6e-60 239.2 200 61.0
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.6e-60 239.2 225 52.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.1e-60 238.8 225 52.9
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.7e-60 238.4 178 67.4
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 3.6e-60 238.0 206 58.7
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.4e-59 236.1 218 56.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.4e-59 236.1 759 78.8
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.8e-59 235.7 212 56.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 2.3e-59 235.3 220 55.0
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 5.1e-59 234.2 198 60.1
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.7e-59 233.8 192 59.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.7e-59 233.8 192 59.9
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 6.7e-59 233.8 197 58.4
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 8.8e-59 233.4 224 54.5
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.1e-58 233.0 199 56.8
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.5e-58 232.6 194 58.8
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-58 232.3 157 73.2
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-58 232.3 181 66.3
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-58 232.3 157 73.2
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.0e-58 232.3 191 59.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 2.0e-58 232.3 202 61.4
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.6e-58 231.9 200 62.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 7.4e-58 230.3 206 58.7
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 9.7e-58 229.9 196 56.6
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.7e-57 229.2 228 52.6
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-57 228.8 213 56.3
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 6.3e-57 227.3 207 58.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-56 226.5 197 58.9
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.1e-56 226.5 198 57.1
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.4e-56 226.1 180 65.0
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 2.4e-56 225.3 200 58.0
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.6e-55 222.6 238 49.6
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.5e-55 221.5 168 68.5
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 3.5e-55 221.5 168 68.5
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 7.7e-55 220.3 193 58.0
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.3e-54 219.5 751 78.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 2.9e-54 218.4 198 59.6
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-54 218.4 202 57.9
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 2.9e-54 218.4 198 55.1
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 5.0e-54 217.6 164 68.9
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-53 215.3 194 59.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 5.5e-53 214.2 210 55.7
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 7.2e-53 213.8 207 53.6
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-52 212.6 199 57.3
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-52 212.6 202 55.4
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-52 212.6 213 51.2
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.0e-51 209.9 221 50.2
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.3e-51 208.8 239 47.7
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 6.7e-51 207.2 200 55.5
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-50 206.1 208 51.9
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 2.6e-50 205.3 200 52.5
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.7e-50 204.1 165 60.6
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 9.7e-50 203.4 179 59.2
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-49 203.0 183 60.1
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-49 203.0 223 48.4
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-49 202.6 158 63.3
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 4.8e-49 201.1 232 47.4
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.4e-48 198.7 168 59.5
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 5.9e-47 194.1 159 61.0
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 8.5e-46 190.3 120 79.2
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 9.4e-45 186.8 168 56.0
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.2e-44 186.4 158 58.2
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 6.8e-43 180.6 179 53.1
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-42 179.5 177 53.7
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.5e-42 179.5 177 53.7
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.7e-42 177.6 190 50.0
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 7.5e-42 177.2 168 56.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 4.8e-41 174.5 179 53.6
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 6.3e-41 174.1 176 52.3
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 8.3e-41 173.7 180 51.7
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.1e-40 173.3 137 58.4
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.8e-40 172.6 132 68.9
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.8e-40 172.6 122 71.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.1e-40 171.8 211 47.4
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 9.1e-40 170.2 107 75.7
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.2e-39 169.9 169 54.4
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.2e-39 169.9 167 52.1
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.2e-39 169.9 122 73.8
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 8.5e-38 163.7 162 53.1
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.9e-37 162.5 171 50.9
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.9e-37 162.5 163 54.0
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 2.1e-36 159.1 109 69.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 4.7e-36 157.9 157 53.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 8.0e-36 157.1 164 52.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 8.8e-35 153.7 170 51.2
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.2e-34 153.3 171 50.3
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.5e-34 150.6 181 49.2
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.7e-33 149.4 136 55.1
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.2e-33 149.1 172 43.0
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 6.3e-33 147.5 160 46.9
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.4e-32 144.4 147 51.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-31 142.1 130 52.3
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 3.8e-30 138.3 150 46.0
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.8e-30 138.3 129 52.7
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 6.6e-30 137.5 175 44.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.1e-29 136.7 129 51.9
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.2e-28 133.3 154 46.1
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.5e-26 126.3 151 44.4
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.5e-26 126.3 194 40.2
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 3.4e-26 125.2 162 45.7
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.9e-25 122.1 154 40.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.0e-22 113.6 163 36.2
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.9e-21 109.4 106 55.7
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 3.4e-18 98.6 124 41.1
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 3.3e-13 82.0 100 47.0
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 4.3e-13 81.6 145 30.3
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 9.2e-08 63.9 40 75.0
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 1.0e-06 60.5 101 34.7
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 1.0e-06 60.5 181 29.3
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 2.3e-06 59.3 143 27.3
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 3.0e-06 58.9 161 28.0
BcaNung01493 Brassica carinata HOM05D006008 ORTHO05D007334 6.6e-06 57.8 41 61.0
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 8.6e-06 57.4 146 28.1


User provided reference genes

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