Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1767.3 883 100.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1642.9 883 94.0
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1481.1 859 86.6
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1436.0 884 82.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 865 79.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 868 78.5
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 875 79.4
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 885 77.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 885 77.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 867 78.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1351.7 885 78.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 879 77.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1347.8 879 77.5
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 879 77.5
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1345.5 866 78.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 863 78.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 865 78.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 887 76.8
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 866 78.1
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 887 77.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 866 78.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 887 77.5
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 879 77.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 883 76.6
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 879 77.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 892 77.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 892 77.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 865 78.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 847 79.7
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 892 77.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 865 77.6
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 884 76.8
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 882 77.4
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 884 77.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 885 76.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 880 76.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 885 75.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1323.5 848 78.7
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 863 78.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 879 76.6
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 881 76.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 871 76.9
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 867 76.8
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 867 76.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 900 71.4
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 879 76.2
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 884 76.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 867 76.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 877 76.9
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 867 76.1
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 883 75.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 884 75.9
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 849 77.7
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 915 73.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 861 76.3
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 847 77.8
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 847 77.4
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 888 75.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 854 77.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 848 77.1
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 884 75.7
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 825 78.3
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 848 76.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 879 75.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 888 76.0
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 848 77.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 895 74.4
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 850 78.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 863 76.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 867 75.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 877 76.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 851 76.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 872 75.2
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 857 76.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 851 76.1
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 846 76.5
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 871 74.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 859 75.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 880 74.4
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 837 76.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 846 76.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 837 76.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 837 76.5
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 864 74.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 865 74.7
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 845 76.4
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 844 76.7
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 856 74.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 842 76.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 918 72.5
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 868 74.7
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 868 74.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 869 74.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 869 74.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 869 74.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 869 74.1
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 814 77.6
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 845 75.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 845 75.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 845 75.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 856 74.9
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 844 75.5
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 871 73.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 841 74.6
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 848 74.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 852 73.7
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 849 73.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 836 76.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 880 72.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 923 69.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 854 74.6
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 845 74.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 846 74.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 861 73.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 784 78.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 845 74.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 847 73.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 784 79.1
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1216.1 845 74.6
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1214.1 850 73.3
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 786 77.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1209.1 843 73.4
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 868 72.5
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1206.8 858 69.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1206.0 818 74.7
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1203.3 851 73.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1202.2 887 70.6
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1199.1 845 73.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 739 80.9
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 885 70.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 868 71.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 852 71.0
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1165.6 842 72.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 886 69.1
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 860 71.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 808 70.9
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 844 69.8
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 792 71.1
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1124.0 848 68.5
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1115.9 853 67.9
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1101.3 759 75.2
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 7.3e-300 1033.9 838 67.1
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 6.4e-272 941.0 602 75.4
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 9.3e-271 937.2 659 68.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-258 895.6 852 59.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 7.7e-257 891.0 586 78.3
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.5e-249 866.7 631 68.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.1e-246 856.3 544 76.8
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-172 610.5 734 49.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.8e-142 509.6 471 56.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.5e-140 503.1 356 77.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.7e-129 467.2 305 73.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.3e-110 405.2 317 70.3
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-97 361.3 424 50.5
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.4e-93 346.7 264 67.0
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-89 334.7 610 43.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 5.2e-64 250.4 153 77.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.5e-55 222.2 183 64.5
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.4e-46 190.3 165 58.8
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 3.1e-32 144.8 496 27.6
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.5e-31 141.0 481 26.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.7e-30 139.0 490 27.3
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.8e-30 137.9 76 82.9
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 8.7e-27 126.7 469 26.2
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.3e-26 124.8 62 93.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.8e-25 121.7 96 65.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.1e-24 117.9 498 26.5
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 6.5e-22 110.5 65 76.9
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-20 104.4 107 50.5
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-16 92.4 229 31.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-14 84.7 284 26.4
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 8.5e-14 83.6 78 55.1
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 7.2e-13 80.5 154 35.7
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.8e-08 65.9 140 30.0
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-08 65.1 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

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