Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62041663 Chenopodium quinoa HOM05D000228 ORTHO05D002228 1.2e-194 682.9 341 100.0
AUR62043031 Chenopodium quinoa HOM05D000228 ORTHO05D002228 2.2e-55 220.3 293 47.4
EL10As7g23785 Beta vulgaris HOM05D000228 ORTHO05D002228 1.1e-30 138.3 293 34.1
QL02p003915 Quercus lobata HOM05D000228 ORTHO05D002228 4.7e-29 132.9 339 32.7
QL01p015188 Quercus lobata HOM05D004258 ORTHO05D002228 6.2e-29 132.5 368 32.1
Hund05330 Selenicereus undatus HOM05D000228 ORTHO05D002228 8.3e-26 122.1 293 31.7
Haze_18073 Corylus avellana HOM05D000228 ORTHO05D002228 1.7e-23 114.4 295 31.5
Atru.chr13.751 Acer truncatum HOM05D000228 ORTHO05D002228 8.1e-21 105.5 296 30.4
Actinidia22658 Actinidia chinensis HOM05D000228 ORTHO05D002228 6.8e-20 102.4 143 47.6
Ciclev10002565m.g Citrus clementina HOM05D000228 ORTHO05D002228 2.0e-19 100.9 296 30.4
Potri.014G023400 Populus trichocarpa HOM05D000228 ORTHO05D002228 2.6e-19 100.5 294 29.9
CSS0007103 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D002228 4.4e-19 99.8 295 29.5
CANSAT25G3330 Cannabis sativa HOM05D000228 ORTHO05D002228 6.4e-18 95.9 296 29.1
PGR031G1232 Punica granatum HOM05D000228 ORTHO05D002228 1.4e-17 94.7 114 53.5
Sc02g0007540 Simmondsia chinensis HOM05D000228 ORTHO05D002228 1.4e-17 94.7 121 52.1
AUR62041662 Chenopodium quinoa HOM05D000228 ORTHO05D002228 3.2e-17 93.6 293 28.7
GSVIVG01009433001 Vitis vinifera HOM05D000228 ORTHO05D002228 6.0e-16 89.4 294 26.9
Rhsim06G0055000 Rhododendron simsii HOM05D000228 ORTHO05D002228 7.8e-16 89.0 106 46.2
TAR376G0065 Trochodendron aralioides HOM05D000228 ORTHO05D002228 7.8e-16 89.0 297 28.3
FvH4_2g33750 Fragaria vesca HOM05D000228 ORTHO05D002228 3.0e-15 87.0 295 28.1
Cpa.g.sc21.153 Carica papaya HOM05D000003 ORTHO05D000004 3.9e-15 86.7 120 45.0
Gorai.005G101200 Gossypium raimondii HOM05D000228 ORTHO05D002228 5.1e-15 86.3 109 53.2
CAN.G1812.2 Capsicum annuum HOM05D000228 ORTHO05D002228 8.6e-15 85.5 293 27.3
FAN24G2767 Fragaria x ananassa HOM05D000228 ORTHO05D002228 1.9e-14 84.3 295 27.5
Oeu044857.1 Olea europaea HOM05D000228 ORTHO05D002228 1.9e-14 84.3 291 26.5
Hma1.2p1_0360F.1_g135925 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 2.5e-14 84.0 295 29.5
Hma1.2p1_1473F.1_g285730 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 2.5e-14 84.0 295 29.5
Nitab4.5_0004339g0100 Nicotiana tabacum HOM05D000228 ORTHO05D002228 2.5e-14 84.0 109 48.6
Hma1.2p1_0360F.1_g135920 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 4.3e-14 83.2 110 54.5
ClCG05G020220 Citrullus lanatus HOM05D000228 ORTHO05D002228 5.6e-14 82.8 295 29.8
TWI56G1010 Tripterygium wilfordii HOM05D000228 ORTHO05D002228 5.6e-14 82.8 295 28.1
Gohir.A02G082400 Gossypium hirsutum HOM05D000228 ORTHO05D002228 7.3e-14 82.4 108 50.0
Cfa018055 Carpinus fangiana HOM05D000228 ORTHO05D002228 9.5e-14 82.0 106 43.4
Dinv35925 Davidia involucrata HOM05D000228 ORTHO05D002228 9.5e-14 82.0 303 27.1
MD08G1093500 Malus domestica HOM05D000228 ORTHO05D002228 2.1e-13 80.9 294 27.2
COL.COLO4_10115 Corchorus olitorius HOM05D000228 ORTHO05D002228 3.6e-13 80.1 106 47.2
MSTRG.25069 Avicennia marina HOM05D000228 ORTHO05D002228 4.7e-13 79.7 121 46.3
Cc10_g04880 Coffea canephora HOM05D000228 ORTHO05D002228 4.7e-13 79.7 298 27.9
CsaV3_4G034700 Cucumis sativus L. HOM05D000228 ORTHO05D002228 4.7e-13 79.7 118 44.9
Migut.C00531 Erythranthe guttata HOM05D000228 ORTHO05D002228 6.2e-13 79.3 295 26.8
MD15G1077200 Malus domestica HOM05D000228 ORTHO05D002228 6.2e-13 79.3 299 26.8
Nn5g30398 Nelumbo nucifera HOM05D000228 ORTHO05D002228 6.2e-13 79.3 293 25.9
Prupe.1G430600 Prunus persica HOM05D000228 ORTHO05D002228 1.1e-12 78.6 297 27.6
RcHm_v2.0_Chr6g0308801 Rosa chinensis HOM05D000228 ORTHO05D002228 1.1e-12 78.6 294 26.2
Thecc.08G001100 Theobroma cacao HOM05D000228 ORTHO05D002228 1.1e-12 78.6 301 25.6
Duzib093G1053 Durio zibethinus HOM05D000228 ORTHO05D002228 1.4e-12 78.2 124 42.7
Eucgr.F02303 Eucalyptus grandis HOM05D000228 ORTHO05D002228 1.8e-12 77.8 121 46.3
SGA_v2.0_scaffold74G24695 Striga asiatica HOM05D000228 ORTHO05D002228 2.3e-12 77.4 299 27.1
Sabra14G0016000 Salix brachista HOM05D000228 ORTHO05D002228 5.2e-12 76.3 294 25.9
AUR62026569 Chenopodium quinoa HOM05D007772 ORTHO05D009623 6.8e-12 75.9 79 45.6
MELO3C016785.2 Cucumis melo HOM05D000228 ORTHO05D002228 8.9e-12 75.5 107 44.9
MBI16_g33270_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D002228 8.9e-12 75.5 38 86.8
FAN27G2591 Fragaria x ananassa HOM05D000228 ORTHO05D002228 2.0e-11 74.3 39 82.1
HanXRQChr09g0267101 Helianthus annuus HOM05D000228 ORTHO05D002228 2.0e-11 74.3 122 42.6
Sopen04g032080 Solanum pennellii HOM05D000228 ORTHO05D002228 2.0e-11 74.3 38 81.6
PGSC0003DMG400008002 Solanum tuberosum HOM05D000228 ORTHO05D002228 2.0e-11 74.3 38 81.6
CiPaw.15G052000 Carya illinoinensis HOM05D000228 ORTHO05D002228 2.6e-11 73.9 112 49.1
Actinidia27244 Actinidia chinensis HOM05D000228 ORTHO05D002228 3.4e-11 73.6 41 78.0
Lj4A765G44 Lonicera japonica HOM05D000228 ORTHO05D002228 3.4e-11 73.6 106 43.4
MD08G1093000 Malus domestica HOM05D000228 ORTHO05D002228 7.6e-11 72.4 38 81.6
Nitab4.5_0006058g0020 Nicotiana tabacum HOM05D000228 ORTHO05D002228 7.6e-11 72.4 38 78.9
Lsat_1_v5_gn_4_128040 Lactuca sativa HOM05D000228 ORTHO05D002228 9.9e-11 72.0 38 81.6
ECA232G1882 Erigeron canadensis HOM05D000228 ORTHO05D002228 1.7e-10 71.2 38 78.9
HanXRQChr16g0508861 Helianthus annuus HOM05D000228 ORTHO05D002228 1.7e-10 71.2 73 49.3
Manes.18G041500 Manihot esculenta HOM05D000228 ORTHO05D002228 1.7e-10 71.2 38 78.9
Solyc04g078480.3 Solanum lycopersicum HOM05D000228 ORTHO05D002228 1.7e-10 71.2 38 78.9
VMungo1309G3016 Vigna mungo HOM05D000228 ORTHO05D002228 1.7e-10 71.2 151 37.7
Ca_15933_v3 Cicer arietinum L. HOM05D000228 ORTHO05D002228 2.2e-10 70.9 95 43.2
DCAR_012794 Daucus carota HOM05D000228 ORTHO05D002228 2.2e-10 70.9 40 75.0
FAN15G0998 Fragaria x ananassa HOM05D000228 ORTHO05D002228 2.2e-10 70.9 38 78.9
FAN20G0088 Fragaria x ananassa HOM05D000228 ORTHO05D002228 2.2e-10 70.9 38 78.9
Lalb_Chr14g0368461 Lupinus albus HOM05D000228 ORTHO05D002228 2.2e-10 70.9 51 64.7
Peaxi162Scf11003g00017 Petunia axillaris HOM05D000228 ORTHO05D002228 2.2e-10 70.9 38 76.3
Psat5g041840 Pisum sativum HOM05D000228 ORTHO05D002228 2.2e-10 70.9 109 41.3
SalBow7G0925 Salvia bowleyana HOM05D000228 ORTHO05D002228 2.2e-10 70.9 38 81.6
Oeu054784.1 Olea europaea HOM05D000228 ORTHO05D002228 3.8e-10 70.1 292 23.6
arahy.Tifrunner.gnm1.ann1.0X38XU Arachis hypogaea HOM05D000228 ORTHO05D002228 4.9e-10 69.7 38 76.3
CiPaw.16G037700 Carya illinoinensis HOM05D000228 ORTHO05D002228 4.9e-10 69.7 303 25.1
Nitab4.5_0004339g0090 Nicotiana tabacum HOM05D000228 ORTHO05D002228 4.9e-10 69.7 37 78.4
Glyma.04G041900 Glycine max HOM05D000228 ORTHO05D002228 6.4e-10 69.3 132 37.1
Hma1.2p1_0360F.1_g135930 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 6.4e-10 69.3 38 78.9
Hma1.2p1_1473F.1_g285735 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 6.4e-10 69.3 38 78.9
Lalb_Chr23g0267281 Lupinus albus HOM05D000228 ORTHO05D002228 6.4e-10 69.3 106 41.5
Phvul.009G067500 Phaseolus vulgaris HOM05D000228 ORTHO05D002228 6.4e-10 69.3 143 34.3
Duzib041G0060 Durio zibethinus HOM05D000228 ORTHO05D002228 8.4e-10 68.9 91 39.6
Manes.05G177300 Manihot esculenta HOM05D000228 ORTHO05D002228 8.4e-10 68.9 295 24.4
arahy.Tifrunner.gnm1.ann1.390KDZ Arachis hypogaea HOM05D000228 ORTHO05D002228 1.1e-09 68.6 38 73.7
Sp5g15050 Schrenkiella parvula HOM05D000228 ORTHO05D002228 1.1e-09 68.6 106 42.5
Medtr3g102270 Medicago truncatula HOM05D000228 ORTHO05D002228 1.4e-09 68.2 40 75.0
ATR0724G061 Amborella trichopoda HOM05D000228 ORTHO05D002228 1.9e-09 67.8 38 76.3
EL10As7g23786 Beta vulgaris HOM05D000228 ORTHO05D002228 2.4e-09 67.4 55 63.6
TAR625G1311 Trochodendron aralioides HOM05D000228 ORTHO05D002228 2.4e-09 67.4 38 78.9
CDE04G0164 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 3.2e-09 67.0 54 57.4
Sed0024824 Sechium edule HOM05D000228 ORTHO05D002228 3.2e-09 67.0 38 71.1
Gorai.009G215500 Gossypium raimondii HOM05D000228 ORTHO05D002228 4.1e-09 66.6 124 37.9
THA.LOC104820500 Tarenaya hassleriana HOM05D000228 ORTHO05D002228 4.1e-09 66.6 38 73.7
CARHR155180 Cardamine hirsuta HOM05D000228 ORTHO05D002228 5.4e-09 66.2 38 73.7
Gohir.A05G205800 Gossypium hirsutum HOM05D000228 ORTHO05D002228 5.4e-09 66.2 126 41.3
Lj1g0000098 Lotus japonicus HOM05D000228 ORTHO05D002228 5.4e-09 66.2 118 43.2
TAR556G0001 Trochodendron aralioides HOM05D000228 ORTHO05D002228 5.4e-09 66.2 40 70.0
A06p27060 Brassica napus HOM05D000228 ORTHO05D002228 7.1e-09 65.9 43 62.8
BNapus_Darmor_BZH_scaffold_82p00050 Brassica napus HOM05D000228 ORTHO05D002228 7.1e-09 65.9 43 62.8
BolC3t19014H Brassica oleracea HOM05D000228 ORTHO05D002228 7.1e-09 65.9 43 62.8
AL5G25520 Arabidopsis lyrata HOM05D000228 ORTHO05D002228 9.2e-09 65.5 38 73.7
Thhalv10002669m.g Eutrema salsugineum HOM05D000228 ORTHO05D002228 9.2e-09 65.5 38 73.7
Lalb_Chr14g0368471 Lupinus albus HOM05D000228 ORTHO05D002228 9.2e-09 65.5 38 73.7
HPP92_008275 Vanilla planifolia HOM05D000228 ORTHO05D002228 9.2e-09 65.5 73 46.6
Gohir.D05G209100 Gossypium hirsutum HOM05D000228 ORTHO05D002228 1.2e-08 65.1 124 37.1
Aa31LG4G15640 Aethionema arabicum HOM05D000228 ORTHO05D002228 1.6e-08 64.7 38 71.1
Aqoxy6G02893 Aquilegia oxysepala HOM05D000228 ORTHO05D002228 1.6e-08 64.7 38 73.7
EL10Ac1g01029 Beta vulgaris HOM05D007772 ORTHO05D009623 1.6e-08 64.7 76 38.2
Carub.0005s1290 Capsella rubella HOM05D000228 ORTHO05D002228 1.6e-08 64.7 38 73.7
Aa31LG7G11950 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-08 63.9 135 29.6
THA.LOC104814176 Tarenaya hassleriana HOM05D000228 ORTHO05D002228 2.7e-08 63.9 38 73.7
AT3G46630 Arabidopsis thaliana HOM05D000228 ORTHO05D002228 3.5e-08 63.5 38 71.1
Sed0009441 Sechium edule HOM05D000228 ORTHO05D002228 3.5e-08 63.5 40 65.0
PSO170G1549 Papaver somniferum HOM05D000228 ORTHO05D002228 4.6e-08 63.2 38 71.1
PSO210G7831 Papaver somniferum HOM05D000228 ORTHO05D002228 4.6e-08 63.2 38 71.1
unitig_46.g17916 Utricularia gibba HOM05D000228 ORTHO05D002228 6.0e-08 62.8 107 40.2
BcaB02g10715 Brassica carinata HOM05D000228 ORTHO05D002228 7.8e-08 62.4 38 65.8
BcaC01g02256 Brassica carinata HOM05D000228 ORTHO05D002228 7.8e-08 62.4 38 65.8
BraA06t25644Z Brassica rapa HOM05D000228 ORTHO05D002228 7.8e-08 62.4 38 65.8
CDE07G0926 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 1.0e-07 62.0 38 63.2
Lj1g0024147 Lotus japonicus HOM05D000228 ORTHO05D002228 1.3e-07 61.6 38 65.8
Gohir.D02G090400 Gossypium hirsutum HOM05D000228 ORTHO05D002228 1.7e-07 61.2 107 46.7
Lj1g0018084 Lotus japonicus HOM05D000228 ORTHO05D002228 2.3e-07 60.8 51 52.9
Os08g0308700 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D002228 2.3e-07 60.8 38 65.8
Zm00001eb057280 Zea mays HOM05D000228 ORTHO05D002228 3.0e-07 60.5 38 68.4
Potri.014G023200 Populus trichocarpa HOM05D000228 ORTHO05D002228 3.9e-07 60.1 37 67.6
EL10Ac4g09709 Beta vulgaris HOM05D007772 ORTHO05D009623 1.1e-06 58.5 79 36.7
Oeu048946.1 Olea europaea HOM05D000228 ORTHO05D002228 1.1e-06 58.5 107 35.5
Lsat_1_v5_gn_6_112221 Lactuca sativa HOM05D000228 ORTHO05D002228 3.3e-06 57.0 38 60.5
Os09g0112400 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D002228 3.3e-06 57.0 55 49.1
EL10Ac8g20286 Beta vulgaris HOM05D007772 ORTHO05D009623 4.3e-06 56.6 83 34.9
Glyma.14G086100 Glycine max HOM05D000228 ORTHO05D002228 4.3e-06 56.6 40 62.5
Glyma.17G238600 Glycine max HOM05D000228 ORTHO05D002228 4.3e-06 56.6 40 62.5
EL10As7g23780 Beta vulgaris HOM05D007772 ORTHO05D009623 5.6e-06 56.2 76 38.2
SEGI_20244 Sequoiadendron giganteum HOM05D000228 ORTHO05D002228 7.3e-06 55.8 38 57.9


User provided reference genes

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