Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.6e-72 278.1 136 100.0
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 5.0e-71 273.1 136 97.1
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 3.2e-54 217.2 136 78.7
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 4.5e-48 196.8 135 73.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 3.0e-31 141.0 136 54.4
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 8.1e-29 132.9 137 51.8
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.3e-28 131.3 134 50.0
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 4.0e-28 130.6 136 47.8
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.8e-27 125.9 136 45.6
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.8e-27 125.9 136 45.6
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.7e-26 125.2 136 44.9
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 3.7e-26 124.0 139 48.2
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 6.4e-26 123.2 136 48.5
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 2.4e-25 121.3 138 47.1
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.6e-24 118.6 144 47.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 6.0e-24 116.7 138 45.7
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 6.0e-24 116.7 141 46.8
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 6.0e-24 116.7 141 46.8
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-23 115.2 140 45.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-23 115.2 140 45.7
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.7e-23 115.2 139 47.5
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.7e-23 115.2 138 44.9
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.3e-23 114.8 135 48.1
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 3.0e-23 114.4 137 44.5
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 3.0e-23 114.4 139 45.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-23 114.4 139 45.3
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 3.0e-23 114.4 142 45.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.6e-23 112.8 139 44.6
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.5e-22 112.1 135 44.4
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.5e-22 112.1 136 44.9
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 2.5e-22 111.3 135 40.7
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 2.5e-22 111.3 135 46.7
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.2e-21 109.0 140 42.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.6e-21 108.6 140 42.9
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.8e-21 107.8 141 44.7
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.8e-21 107.8 91 60.4
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 8.1e-21 106.3 139 44.6
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 6.8e-20 103.2 140 42.1
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 6.8e-20 103.2 104 51.9
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 6.8e-20 103.2 140 42.1
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.0e-19 101.7 136 43.4
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 3.4e-19 100.9 137 41.6
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.7e-18 98.6 113 43.4
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.2e-18 98.2 138 40.6
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 2.2e-18 98.2 131 42.7
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.1e-17 95.9 133 38.3
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.1e-17 95.9 81 54.3
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 1.1e-17 95.9 80 55.0
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 1.1e-17 95.9 134 39.6
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 4.1e-17 94.0 133 37.6
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 4.1e-17 94.0 132 43.2
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 9.2e-17 92.8 131 38.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 9.2e-17 92.8 132 39.4
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.1e-16 91.7 135 40.0
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 2.1e-16 91.7 133 37.6
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.1e-16 91.7 145 35.9
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.0e-15 89.4 139 40.3
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.0e-15 89.4 143 39.9
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 2.3e-15 88.2 83 51.8
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 2.3e-15 88.2 148 38.5
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.3e-15 88.2 138 40.6
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 3.9e-15 87.4 145 37.9
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 6.6e-15 86.7 137 35.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 8.6e-15 86.3 67 58.2
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.1e-14 85.9 136 36.8
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.1e-14 85.9 136 37.5
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.5e-14 85.5 134 38.1
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 1.9e-14 85.1 137 38.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 3.3e-14 84.3 141 39.0
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 5.6e-14 83.6 63 60.3
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 7.3e-14 83.2 155 34.2
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 9.6e-14 82.8 60 63.3
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 2.1e-13 81.6 151 36.4
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 3.6e-13 80.9 151 33.8
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 4.7e-13 80.5 145 34.5
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 6.2e-13 80.1 136 36.0
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 6.2e-13 80.1 136 36.0
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 6.2e-13 80.1 88 40.9
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 6.2e-13 80.1 136 35.3
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 2.4e-12 78.2 76 47.4
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.4e-12 78.2 63 57.1
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 9.0e-12 76.3 132 35.6
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 1.2e-11 75.9 74 47.3
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 3.4e-11 74.3 69 50.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.9e-10 71.2 96 38.5
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 7.1e-09 66.6 145 29.7
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 7.1e-09 66.6 84 41.7
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.2e-08 65.9 136 35.3
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 1.2e-08 65.9 67 49.3
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 3.0e-07 61.2 41 65.9
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 6.6e-07 60.1 45 62.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 6.6e-07 60.1 41 63.4


User provided reference genes

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