Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.6e-143 510.8 271 100.0
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.3e-138 496.5 276 96.4
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.2e-129 465.3 276 90.9
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 5.6e-126 454.5 277 88.4
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 4.3e-118 428.3 276 83.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 3.4e-115 418.7 276 81.2
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.3e-114 416.8 290 78.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-113 413.3 272 80.5
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.5e-112 408.7 275 80.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.0e-111 405.6 271 79.3
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 6.7e-111 404.4 276 77.5
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.9e-110 402.9 275 79.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.5e-110 402.5 271 79.3
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 4.3e-110 401.7 272 78.3
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 7.4e-110 401.0 271 79.3
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.4e-110 401.0 276 76.8
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.4e-110 401.0 276 76.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.3e-109 400.2 272 78.7
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.6e-109 399.8 276 76.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 2.1e-109 399.4 276 76.1
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.1e-109 399.4 276 76.1
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 4.8e-109 398.3 272 77.6
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 6.2e-109 397.9 276 76.1
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-108 396.7 276 75.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.8e-108 396.4 276 75.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.0e-108 395.2 276 75.7
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 5.3e-108 394.8 274 77.7
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 9.0e-108 394.0 272 78.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 9.0e-108 394.0 280 76.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.5e-107 393.3 276 75.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-107 393.3 282 74.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.4e-107 392.1 276 73.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 4.5e-107 391.7 277 76.9
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 4.5e-107 391.7 276 73.6
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 4.5e-107 391.7 275 74.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 5.8e-107 391.3 275 77.1
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 5.8e-107 391.3 269 77.0
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 7.6e-107 391.0 273 75.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-106 390.2 289 74.4
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-106 390.2 275 74.2
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.3e-106 390.2 271 77.1
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.2e-106 389.4 277 75.8
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.8e-106 388.7 277 74.7
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.8e-106 388.7 269 76.6
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 4.9e-106 388.3 277 76.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 6.5e-106 387.9 276 74.6
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.5e-106 387.9 277 74.7
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 8.4e-106 387.5 272 77.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.1e-105 387.1 270 77.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.9e-105 386.3 273 76.9
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.9e-105 386.3 277 75.1
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.5e-105 386.0 283 74.6
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.2e-105 385.6 270 76.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 3.2e-105 385.6 274 75.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 4.2e-105 385.2 272 75.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.2e-105 385.2 272 75.4
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.2e-105 385.2 272 75.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-104 383.6 277 74.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.1e-104 382.9 277 74.0
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.1e-104 382.9 272 74.6
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.7e-104 382.5 276 75.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.0e-104 381.3 277 73.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 7.9e-104 380.9 272 75.7
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 5.1e-103 378.3 277 73.6
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 8.7e-103 377.5 273 73.6
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.5e-102 375.9 274 74.8
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.5e-102 375.9 274 73.0
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 4.3e-102 375.2 273 72.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.6e-101 373.2 274 72.3
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.6e-101 373.2 283 72.1
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.2e-101 372.9 274 74.5
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.7e-101 372.1 274 71.9
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 6.3e-101 371.3 274 72.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.2e-101 370.9 273 72.5
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.1e-100 370.5 273 72.2
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.4e-100 370.2 274 73.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.4e-100 370.2 274 73.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 3.1e-100 369.0 274 72.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 4.5e-99 365.2 277 71.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.0e-98 364.0 274 71.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.3e-98 363.6 256 76.6
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-98 362.5 277 70.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-98 362.5 277 70.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.8e-98 362.1 277 71.5
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.8e-98 362.1 277 71.1
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.0e-98 361.7 277 70.4
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 6.5e-98 361.3 369 57.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 8.5e-98 360.9 277 70.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.4e-97 360.1 277 70.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.4e-97 360.1 274 70.4
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-97 359.8 277 70.0
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.9e-97 359.8 277 70.4
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.9e-97 359.8 335 62.7
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.5e-97 359.4 277 70.4
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.5e-97 359.4 304 65.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.2e-97 358.6 277 70.0
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 4.2e-97 358.6 270 72.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 5.5e-97 358.2 322 64.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-95 354.0 272 70.6
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-95 353.6 272 71.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-95 353.6 272 71.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-95 353.6 272 71.0
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 9.7e-94 347.4 276 69.6
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.7e-94 347.4 262 69.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.8e-93 345.1 272 69.9
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.1e-92 340.9 271 66.4
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.1e-92 340.9 271 66.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.3e-90 337.0 319 61.1
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.2e-90 336.3 268 67.2
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 6.5e-90 334.7 265 69.8
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.2e-89 332.4 265 66.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.0e-87 327.4 267 64.8
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.5e-86 323.6 279 63.4
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.1e-84 315.8 265 62.3
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.4e-83 312.4 270 58.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.3e-82 310.5 488 43.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.8e-82 308.9 488 43.4
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 8.5e-82 307.8 270 58.5
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 6.3e-77 291.6 215 74.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.4e-76 290.4 266 58.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 9.1e-76 287.7 272 58.5
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.5e-74 281.2 263 57.0
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.6e-72 275.8 271 54.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-72 275.4 250 60.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 6.1e-72 275.0 250 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.0e-71 274.2 263 54.8
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-69 264.6 253 60.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-68 263.8 254 60.2
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-68 262.3 277 54.9
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-67 260.8 277 54.9
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-67 260.4 277 54.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.0e-67 260.0 262 51.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-67 258.8 277 54.9
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.0e-66 257.7 254 60.6
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-65 254.2 277 54.5
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.1e-65 254.2 279 49.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.1e-65 254.2 280 56.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 6.1e-64 248.4 158 82.3
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 4.0e-63 245.7 275 48.0
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 6.3e-61 238.4 276 52.5
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-59 233.8 251 54.2
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 4.5e-59 232.3 226 59.3
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 9.5e-57 224.6 147 76.9
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.7e-56 222.2 266 47.7
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.1e-56 221.9 265 50.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-46 189.9 131 74.0
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-45 186.4 246 47.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.2e-44 183.0 136 72.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.0e-43 178.7 130 70.8
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-42 177.6 269 46.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-41 172.9 148 62.2
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-39 166.8 138 60.1
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.0e-39 166.0 158 62.7
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.9e-39 164.9 130 65.4
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.2e-38 164.5 163 57.1
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-38 164.1 96 86.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.5e-35 152.9 228 42.5
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.6e-35 152.5 121 68.6
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.4e-30 136.0 141 55.3
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 6.6e-26 122.1 286 29.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.1e-25 121.3 255 34.1
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-21 107.5 73 79.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.2e-21 107.1 263 29.7
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.4e-20 103.6 139 47.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.1e-20 102.1 145 46.9
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 5.6e-17 92.4 67 65.7
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-16 91.3 107 49.5
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 82 56.1
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.8e-16 90.1 59 76.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.0e-15 86.3 68 60.3
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-15 85.9 51 84.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 6.9e-15 85.5 51 82.4
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 6.9e-15 85.5 51 82.4
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 6.9e-15 85.5 70 65.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-14 84.3 51 82.4
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-14 83.2 51 82.4
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 3.4e-14 83.2 53 73.6
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.8e-14 82.4 71 63.4
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.8e-14 82.4 71 63.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-13 80.1 49 79.6
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.4e-13 79.0 71 60.6
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 8.4e-13 78.6 65 64.6
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 3.5e-11 73.2 68 52.9
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 8.1e-08 62.0 52 57.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 2.0e-06 57.4 40 72.5


User provided reference genes

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