Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 4.3e-201 704.9 489 100.0
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.4e-159 566.2 489 87.1
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.3e-141 507.3 490 81.8
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 9.8e-137 491.1 491 78.8
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.9e-80 303.5 454 60.4
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.6e-78 297.7 449 60.8
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.3e-77 294.7 466 59.9
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 3.0e-77 293.5 459 63.6
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 8.7e-77 292.0 491 60.1
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.9e-76 290.8 459 56.2
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.6e-76 289.3 457 64.8
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 7.4e-76 288.9 452 60.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 3.7e-75 286.6 467 58.0
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 4.8e-75 286.2 484 56.6
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 6.2e-75 285.8 458 64.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 8.1e-75 285.4 484 57.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.1e-74 285.0 466 58.6
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.1e-74 285.0 508 59.6
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.8e-74 284.3 466 58.6
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 5.3e-74 282.7 466 57.7
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.3e-74 282.7 466 57.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.2e-73 281.6 511 54.2
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 4.5e-73 279.6 468 57.1
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 4.5e-73 279.6 447 62.9
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 7.6e-73 278.9 446 63.2
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 7.6e-73 278.9 473 61.9
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.0e-72 278.5 466 58.8
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.8e-72 276.6 353 73.7
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 6.5e-72 275.8 502 53.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 8.4e-72 275.4 501 58.3
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.1e-71 275.0 500 53.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.4e-71 274.6 491 54.4
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.4e-71 274.6 506 59.1
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.9e-71 274.2 493 57.6
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 3.2e-71 273.5 500 59.8
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 3.2e-71 273.5 490 58.4
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.2e-71 273.1 377 65.8
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 4.2e-71 273.1 483 59.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 5.5e-71 272.7 473 55.2
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 5.5e-71 272.7 505 53.5
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 5.5e-71 272.7 476 55.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.2e-70 271.6 472 55.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.2e-70 271.6 472 55.5
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 2.1e-70 270.8 515 54.2
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.1e-70 270.8 490 58.2
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.1e-70 270.8 461 56.0
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.1e-70 270.8 448 62.3
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.5e-70 270.0 514 56.8
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 3.5e-70 270.0 495 54.1
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 6.0e-70 269.2 482 60.0
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 6.0e-70 269.2 533 54.8
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.3e-69 268.1 482 55.0
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 2.3e-69 267.3 504 54.6
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 3.9e-69 266.5 482 58.3
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 5.1e-69 266.2 394 61.9
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 6.7e-69 265.8 473 58.6
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 6.7e-69 265.8 445 55.7
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 6.7e-69 265.8 473 59.6
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 6.7e-69 265.8 500 57.4
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 8.7e-69 265.4 464 46.8
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 3.3e-68 263.5 502 53.6
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 4.3e-68 263.1 465 56.1
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 5.7e-68 262.7 490 58.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 5.7e-68 262.7 376 65.7
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 7.4e-68 262.3 477 57.9
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 9.6e-68 261.9 472 59.1
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.1e-67 260.8 394 59.1
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.8e-67 260.4 482 55.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 8.2e-67 258.8 495 53.3
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.1e-66 258.5 526 50.6
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.4e-66 258.1 491 57.2
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 3.1e-66 256.9 474 54.4
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 9.0e-66 255.4 526 51.3
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.2e-65 255.0 530 55.1
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 5.9e-65 252.7 507 56.0
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.0e-64 251.9 493 57.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.0e-64 251.9 468 55.1
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.7e-64 251.1 338 68.6
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 2.2e-64 250.8 504 54.0
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 5.0e-64 249.6 352 71.0
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 3.6e-62 243.4 459 55.8
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.0e-61 241.9 445 57.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.1e-61 239.6 445 37.5
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 8.7e-61 238.8 459 57.5
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.3e-59 235.0 518 51.4
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 4.8e-59 233.0 456 57.5
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.6e-57 227.3 325 66.2
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.3e-56 224.9 477 50.1
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.2e-56 224.2 353 62.9
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 4.2e-55 219.9 533 47.3
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.3e-53 214.2 489 53.6
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 8.8e-53 212.2 292 70.2
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.3e-51 208.4 327 69.4
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.7e-51 208.0 496 51.4
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.5e-49 201.4 499 53.7
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.7e-48 198.0 474 46.8
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.9e-47 194.5 415 56.4
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 2.2e-43 181.0 292 72.6
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 7.7e-41 172.6 292 66.8
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 1.3e-40 171.8 347 61.7
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.1e-39 168.7 418 54.8
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.1e-38 162.9 285 72.6
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 6.7e-37 159.5 295 47.8
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 4.4e-36 156.8 457 52.3
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 2.7e-30 137.5 136 64.0
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 4.7e-30 136.7 232 40.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.2e-28 132.1 281 39.1
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 7.0e-26 122.9 91 81.3
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 4.5e-25 120.2 211 35.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 6.5e-24 116.3 91 78.0
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 1.8e-21 108.2 97 54.6
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.7e-20 103.2 321 55.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 3.8e-16 90.5 54 74.1
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 3.8e-16 90.5 306 52.9
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.1e-15 89.0 343 49.9
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 5.6e-15 86.7 346 46.8
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.5e-07 61.2 325 23.4
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 4.3e-07 60.5 351 32.5


User provided reference genes

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