Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.8e-36 155.6 89 100.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 4.4e-35 151.0 89 96.6
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 4.0e-20 101.3 89 70.8
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 5.2e-20 100.9 78 65.4
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.2e-19 99.8 86 58.1
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.2e-19 99.8 70 65.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.2e-19 99.8 61 73.8
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.0e-19 99.0 71 67.6
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.4e-19 98.2 56 76.8
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 9.8e-19 96.7 56 76.8
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.7e-18 95.9 85 57.6
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.7e-18 95.9 68 66.2
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.7e-18 95.9 70 68.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.7e-18 95.9 70 68.6
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.7e-18 94.7 53 77.4
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 4.8e-18 94.4 65 61.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.3e-18 93.6 57 73.7
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.1e-17 93.2 66 62.1
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.8e-17 92.4 61 62.3
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 3.1e-17 91.7 80 58.8
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.1e-17 91.7 61 62.3
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.1e-17 91.7 105 55.2
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 4.1e-17 91.3 60 71.7
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 4.1e-17 91.3 71 59.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 5.4e-17 90.9 62 64.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 7.0e-17 90.5 51 76.5
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 9.1e-17 90.1 70 61.4
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 9.1e-17 90.1 52 75.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.6e-16 89.4 71 62.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.6e-16 89.4 56 66.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.0e-16 89.0 78 55.1
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.0e-16 89.0 72 56.9
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.7e-16 88.6 82 56.1
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.7e-16 88.6 72 68.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.7e-16 88.6 56 64.3
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.5e-16 88.2 86 55.8
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 3.5e-16 88.2 70 58.6
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 4.5e-16 87.8 70 57.1
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 5.9e-16 87.4 66 59.1
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 7.7e-16 87.0 51 70.6
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 7.7e-16 87.0 72 66.7
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.7e-16 87.0 72 66.7
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 1.0e-15 86.7 51 72.5
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.0e-15 86.7 60 63.3
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.0e-15 86.7 72 56.9
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.3e-15 86.3 65 64.6
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.9e-15 85.1 70 55.7
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.9e-15 85.1 54 64.8
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.9e-15 85.1 54 63.0
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.9e-15 85.1 70 55.7
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.9e-15 85.1 70 55.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.8e-15 84.7 53 64.2
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.6e-15 84.0 72 66.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 8.6e-15 83.6 58 60.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.1e-14 83.2 63 54.0
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 1.5e-14 82.8 70 55.7
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.9e-14 82.4 73 50.7
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.9e-14 82.4 63 54.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.9e-14 82.4 52 59.6
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.9e-14 82.4 70 55.7
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 2.5e-14 82.0 65 56.9
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.5e-14 82.0 65 56.9
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.5e-14 82.0 61 57.4
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 2.5e-14 82.0 57 57.9
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 4.2e-14 81.3 61 59.0
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.6e-13 79.3 64 54.7
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.6e-13 79.3 66 54.5
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.6e-13 79.3 51 60.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 2.8e-13 78.6 45 73.3
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.8e-13 78.6 48 64.6
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.6e-13 78.2 61 57.4
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.6e-13 78.2 61 57.4
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 3.6e-13 78.2 54 63.0
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.1e-13 77.4 54 63.0
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.1e-13 77.4 63 52.4
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 6.1e-13 77.4 62 56.5
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 8.0e-13 77.0 69 50.7
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.0e-12 76.6 59 61.0
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.4e-12 76.3 53 58.5
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.4e-12 76.3 63 55.6
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.4e-12 76.3 57 59.6
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.8e-12 75.9 63 55.6
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.0e-12 75.1 60 56.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.0e-12 75.1 60 56.7
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 5.2e-12 74.3 61 55.7
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 5.2e-12 74.3 51 54.9
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 5.2e-12 74.3 60 50.0
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 6.8e-12 73.9 50 56.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.2e-11 73.2 63 52.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.5e-11 72.8 59 54.2
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.5e-11 72.8 59 54.2
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.5e-11 72.8 59 54.2
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.5e-11 72.8 63 61.9
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 4.4e-11 71.2 64 53.1
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 4.4e-11 71.2 63 52.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.5e-11 70.5 59 52.5
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 9.8e-11 70.1 61 45.9
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.2e-10 68.9 51 52.9
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.2e-10 68.9 60 51.7
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 3.7e-10 68.2 55 52.7
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 3.7e-10 68.2 46 54.3
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 6.3e-10 67.4 46 56.5
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 6.3e-10 67.4 60 55.0
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 6.3e-10 67.4 70 54.3
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.8e-09 65.9 56 53.6
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.4e-09 65.5 70 42.9
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 2.4e-09 65.5 46 56.5
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.1e-09 65.1 53 50.9
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.1e-09 64.7 56 51.8
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 4.1e-09 64.7 49 59.2
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 5.4e-09 64.3 63 47.6
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 5.4e-09 64.3 62 54.8
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 7.0e-09 63.9 42 57.1
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 9.2e-09 63.5 59 45.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.2e-08 63.2 40 62.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.0e-08 62.4 62 46.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.5e-08 61.6 59 47.5
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 4.5e-08 61.2 39 59.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.9e-07 58.2 53 43.4
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 3.9e-07 58.2 97 33.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 5.0e-07 57.8 59 45.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-07 57.8 43 51.2
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 6.6e-07 57.4 42 52.4
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 8.6e-07 57.0 48 43.8
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-06 56.6 58 48.3
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.3e-06 55.1 49 44.9
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 4.3e-06 54.7 44 47.7


User provided reference genes

Program Settings